Non-Coding RNA Search

Ss1.1-rnje24c_f14.5

Sequence:


               
               TGACTTGCCCATGTGGCAATTGAGTTCTAATATCTCTAATAAAGGGAGATTTGCTATTGG
TGGAAAGTGTTGACCCTGTAAGGAAGTGTATGTGCCTTTGCCTCTTTTTGCATACGGGGT
TACAGAGGCCTAGAGTGAAGGAATATTTGTTCCCAAATTTAAAAATAGAATGAAAAGGCA
AATTCTTAAAAATTTTATAAAAAAAAAACAAAATGAAACATGCTATCCATTCTGTTTTAA
AATTTGACATAGGCATAATACATTTCTTCCAGGTTTGCTAAAATTGTTTTATGGTAGTGT
CATATTTTGGTGTGGTTTAATATATACCTTAGGGGCAGTTTGAGGCAGTTCCTCATGCCA
TTCAGTTTGAAATTAAATTTTCAATATGCGAATAATGGTTTTATTTTTAAAAAATTTAAA
ATTTTTCACAAAATGGGTTTTTTTCAAACCACAGTGATGAATGTGTGTGATTATCAATCA
CATATCTACCTGTTTGGAATTGCATTGTAGCAAAAAGTTGACTAACTTGTCACGATTGTT
GATAGTGATGTATAATAATACAACCTGGAGTAAATTACCTACAAAAATTCATTCTGGCAG
TAGGACAGTAATAAAGGAGGAATTGTTTTTCCAAACTTTATTGTGAAAAATTTTGAAGTC
CTCACGTACAAGCAAATTGAATGAAGAAGACTAAGGTGCTTTTCAAAAGACTAACTGAAA
TCATCACAGGCCAAAACAGCAATATCTGTTTAATTTAGTTCAATAAGAACAGTGAATCTT
TTTGTTCACTAACGAGTTCTGAGTCAATTAGTGGTAAAAACAAAATTAACTTGTTTTAGT
GAGCCACTGTTATTACAAAGACAAAACGTGGTGCAGAAAATCTTTGCACCTTTCTGCATA
AACTGTTAGACATGACTTTGCTGCTGTTGTGTTTCCAGATATTCCTGCAATATGGGTGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACTTGCCCATGTGGCAATTGAGTTCTAATATCTCTAATAAAGGGAGATTTGCTATTGG
TGGAAAGTGTTGACCCTGTAAGGAAGTGTATGTGCCTTTGCCTCTTTTTGCATACGGGGT
TACAGAGGCCTAGAGTGAAGGAATATTTGTTCCCAAATTTAAAAATAGAATGAAAAGGCA
AATTCTTAAAAATTTTATAAAAAAAAAACAAAATGAAACATGCTATCCATTCTGTTTTAA
AATTTGACATAGGCATAATACATTTCTTCCAGGTTTGCTAAAATTGTTTTATGGTAGTGT
CATATTTTGGTGTGGTTTAATATATACCTTAGGGGCAGTTTGAGGCAGTTCCTCATGCCA
TTCAGTTTGAAATTAAATTTTCAATATGCGAATAATGGTTTTATTTTTAAAAAATTTAAA
ATTTTTCACAAAATGGGTTTTTTTCAAACCACAGTGATGAATGTGTGTGATTATCAATCA
CATATCTACCTGTTTGGAATTGCATTGTAGCAAAAAGTTGACTAACTTGTCACGATTGTT
GATAGTGATGTATAATAATACAACCTGGAGTAAATTACCTACAAAAATTCATTCTGGCAG
TAGGACAGTAATAAAGGAGGAATTGTTTTTCCAAACTTTATTGTGAAAAATTTTGAAGTC
CTCACGTACAAGCAAATTGAATGAAGAAGACTAAGGTGCTTTTCAAAAGACTAACTGAAA
TCATCACAGGCCAAAACAGCAATATCTGTTTAATTTAGTTCAATAAGAACAGTGAATCTT
TTTGTTCACTAACGAGTTCTGAGTCAATTAGTGGTAAAAACAAAATTAACTTGTTTTAGT
GAGCCACTGTTATTACAAAGACAAAACGTGGTGCAGAAAATCTTTGCACCTTTCTGCATA
AACTGTTAGACATGACTTTGCTGCTGTTGTGTTTCCAGATATTCCTGCAATATGGGTGAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               383-502, - strand, RNAz p=0.940438
               

               
               756-860, - strand, RNAz p=0.955597

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               383-502, - strand, RNAz p=0.940438
               

               
               756-860, - strand, RNAz p=0.955597

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               33-960, gnl|bosTau2|chr28 (13112510-13113438)
               

               
               33-960, gnl|Hg17|chr10 (64237162-64238141)
               

               
               33-960, gnl|Mm7|chr10 (67149564-67148608)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-960, gnl|bosTau2|chr28 (13112510-13113438)
               

               
               33-960, gnl|Hg17|chr10 (64237162-64238141)
               

               
               33-960, gnl|Mm7|chr10 (67149564-67148608)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               tbr (0.308356)
               

               
               nje (0.16592)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               nje (0.16592)

	383-502, - strand, RNAz p=0.940438
	756-860, - strand, RNAz p=0.955597

	33-960, gnl\|bosTau2\|chr28 (13112510-13113438)
	33-960, gnl\|Hg17\|chr10 (64237162-64238141)
	33-960, gnl\|Mm7\|chr10 (67149564-67148608)