Non-Coding RNA Search

Ss1.1-rnje24c_h20.5

Sequence:


               
               AGTCCACAGGGAACCTTCTGTGATTATCCAGTGAATCTTTCTGAGGCCCAGAGAGGGTAC
ATAACTTGCCCCAGGTCACACAGCTAACCTATGAGTGGCAGAAGCAGGGTTAGGTCCGGG
CATTCGGCACACACCATGACATGCCCCTCTCCTGATGCCGTCCCAGCCCCTGGGGACTCT
GGGGATTTGAGGTGTCGTCTCCCCGTCCCTCTCCCAAGATCGGCCTCTGAGGGCTCCTGT
AGATTCTGTGTACATTGTACTCATGTATATACCTACACATGCACGTGAACACACAGATAC
ACACGTGCCTGGCCTCAGCTCTGCACCCCCCCACTCCTTCCCTGAGCCCTGCTGCTCAAG
GCAGCTGCTCCGACCCTGCTTCTGTGCCCCTGCCCAGCCCCAGCCCCAGTCCTCTACGTG
GACCAGGTACCTTGGCCAGGACAGGTGTGTGGCTGGTCTCACCTGGTCACACCCCTGCTT
CCCCATATCTCTGTGTACACTCTCAATTAAAGTGGGTTTGTTTCTAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCCACAGGGAACCTTCTGTGATTATCCAGTGAATCTTTCTGAGGCCCAGAGAGGGTAC
ATAACTTGCCCCAGGTCACACAGCTAACCTATGAGTGGCAGAAGCAGGGTTAGGTCCGGG
CATTCGGCACACACCATGACATGCCCCTCTCCTGATGCCGTCCCAGCCCCTGGGGACTCT
GGGGATTTGAGGTGTCGTCTCCCCGTCCCTCTCCCAAGATCGGCCTCTGAGGGCTCCTGT
AGATTCTGTGTACATTGTACTCATGTATATACCTACACATGCACGTGAACACACAGATAC
ACACGTGCCTGGCCTCAGCTCTGCACCCCCCCACTCCTTCCCTGAGCCCTGCTGCTCAAG
GCAGCTGCTCCGACCCTGCTTCTGTGCCCCTGCCCAGCCCCAGCCCCAGTCCTCTACGTG
GACCAGGTACCTTGGCCAGGACAGGTGTGTGGCTGGTCTCACCTGGTCACACCCCTGCTT
CCCCATATCTCTGTGTACACTCTCAATTAAAGTGGGTTTGTTTCTAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               4-94, - strand, RNAz p=0.634674
               

               
               162-320, - strand, RNAz p=0.996818
               

               
               240-351, - strand, RNAz p=0.804718

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-94, - strand, RNAz p=0.634674
               

               
               162-320, - strand, RNAz p=0.996818
               

               
               240-351, - strand, RNAz p=0.804718

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               240-326, - strand, RNAmicro p=0.983729

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               240-326, - strand, RNAmicro p=0.983729

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               4-453, gnl|bosTau2|chr5 (46576590-46577027)
               

               
               4-453, gnl|canFam2|chr10 (31698832-31698116)
               

               
               4-453, gnl|echTel1|scaffold_320257 (50540-49905)
               

               
               4-453, gnl|hg17|chr22 (34273993-34274745)
               

               
               4-453, gnl|Hg17|chr22 (34274012-34274471)
               

               
               4-453, gnl|loxAfr1|scaffold_38249 (30413-31145)
               

               
               4-453, gnl|mm7|chr8 (73765591-73766157)
               

               
               4-453, gnl|oryCun1|scaffold_101870 (4772-4091)
               

               
               4-453, gnl|panTro1|chr23 (34403084-34403832)
               

               
               4-453, gnl|rheMac2|chr10 (79467103-79467855)
               

               
               4-453, gnl|rn3|chr19 (14108388-14108940)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-453, gnl|bosTau2|chr5 (46576590-46577027)
               

               
               4-453, gnl|canFam2|chr10 (31698832-31698116)
               

               
               4-453, gnl|echTel1|scaffold_320257 (50540-49905)
               

               
               4-453, gnl|hg17|chr22 (34273993-34274745)
               

               
               4-453, gnl|Hg17|chr22 (34274012-34274471)
               

               
               4-453, gnl|loxAfr1|scaffold_38249 (30413-31145)
               

               
               4-453, gnl|mm7|chr8 (73765591-73766157)
               

               
               4-453, gnl|oryCun1|scaffold_101870 (4772-4091)
               

               
               4-453, gnl|panTro1|chr23 (34403084-34403832)
               

               
               4-453, gnl|rheMac2|chr10 (79467103-79467855)
               

               
               4-453, gnl|rn3|chr19 (14108388-14108940)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               nje (0.16592)
               

               
               cov (0.132153)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nje (0.16592)
               

               
               cov (0.132153)

	4-94, - strand, RNAz p=0.634674
	162-320, - strand, RNAz p=0.996818
	240-351, - strand, RNAz p=0.804718

	4-453, gnl\|bosTau2\|chr5 (46576590-46577027)
	4-453, gnl\|canFam2\|chr10 (31698832-31698116)
	4-453, gnl\|echTel1\|scaffold_320257 (50540-49905)
	4-453, gnl\|hg17\|chr22 (34273993-34274745)
	4-453, gnl\|Hg17\|chr22 (34274012-34274471)
	4-453, gnl\|loxAfr1\|scaffold_38249 (30413-31145)
	4-453, gnl\|mm7\|chr8 (73765591-73766157)
	4-453, gnl\|oryCun1\|scaffold_101870 (4772-4091)
	4-453, gnl\|panTro1\|chr23 (34403084-34403832)
	4-453, gnl\|rheMac2\|chr10 (79467103-79467855)
	4-453, gnl\|rn3\|chr19 (14108388-14108940)