Non-Coding RNA Search

Ss1.1-rnje25c_e5.5

Sequence:


               
               GAGCTGAGCGGCAGCGACGCAGAGCGCACAGAGGCAGCGAAGCAGAGCTCACAGAGGACC
TGTCGCCAAAGCCCACGGCCATGGGTAGGGAACTGAAGGTGAAGATGCTGGGAGGCAAGG
AGATCCTGGTGCCCTTGAGGGACTGCATGATGGCATCGGACCTGAAGCAGCAGATCGCCC
GGGAGATCGGTGTGCCCGCCTTCCAGCAGCGTCTGGCTCACCCAGCCGGCAATGTGCTTC
AGGATGGGGTGCCCCTGGTCAACCAGGGCCTGGGCCCAGGCAGCACAGTCCTGTTGATGG
TGCAAAGCTTCAGAGACCCACTGAGCATCCTGGTGAGGAACGACAAGGGTCGCAGCAACG
CCTATGAGGTCTGGCTGACGCAGACAGTGGCTGAGCTCAAGCAGCAGGTGTGTCAGCAGG
AGGGCGTGCAAGCTGACCAGTTCTGGCTGACTTTCGAGGGGAAGCCCATGGAGGATGAGC
ACCAGCTGGGGGAGTATGACCTCAAGCCTATGTGCACCGTGTATATGAATCTGCGCCTGC
GGGGGGGCGGGACAGGGCCAGGGGAGCACCTCACCGAGTGCTAGTAATAAAGCTGTGGCA
AAATTGAGTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTGAGCGGCAGCGACGCAGAGCGCACAGAGGCAGCGAAGCAGAGCTCACAGAGGACC
TGTCGCCAAAGCCCACGGCCATGGGTAGGGAACTGAAGGTGAAGATGCTGGGAGGCAAGG
AGATCCTGGTGCCCTTGAGGGACTGCATGATGGCATCGGACCTGAAGCAGCAGATCGCCC
GGGAGATCGGTGTGCCCGCCTTCCAGCAGCGTCTGGCTCACCCAGCCGGCAATGTGCTTC
AGGATGGGGTGCCCCTGGTCAACCAGGGCCTGGGCCCAGGCAGCACAGTCCTGTTGATGG
TGCAAAGCTTCAGAGACCCACTGAGCATCCTGGTGAGGAACGACAAGGGTCGCAGCAACG
CCTATGAGGTCTGGCTGACGCAGACAGTGGCTGAGCTCAAGCAGCAGGTGTGTCAGCAGG
AGGGCGTGCAAGCTGACCAGTTCTGGCTGACTTTCGAGGGGAAGCCCATGGAGGATGAGC
ACCAGCTGGGGGAGTATGACCTCAAGCCTATGTGCACCGTGTATATGAATCTGCGCCTGC
GGGGGGGCGGGACAGGGCCAGGGGAGCACCTCACCGAGTGCTAGTAATAAAGCTGTGGCA
AAATTGAGTGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57086833|ref|XP_536714.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57086833|ref|XP_536714.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               198-314, - strand, RNAz p=0.939406

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-314, - strand, RNAz p=0.939406

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               83-567, gnl|bosTau2|chr16 (41280832-41280353)
               

               
               83-567, gnl|Hg17|chr1 (989430-989917)
               

               
               83-567, gnl|Mm7|chr17 (44535164-44534681)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-567, gnl|bosTau2|chr16 (41280832-41280353)
               

               
               83-567, gnl|Hg17|chr1 (989430-989917)
               

               
               83-567, gnl|Mm7|chr17 (44535164-44534681)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cag (2.57031)
               

               
               nje (1.49328)
               

               
               nmm (0.796813)
               

               
               jej (0.395687)
               

               
               nep (0.36785)
               

               
               duo (0.345602)
               

               
               csp (0.322373)
               

               
               cga (0.279096)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               che (0.136314)
               

               
               cly (0.120642)

Expressed library(ies): 13 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (2.57031)
               

               
               nje (1.49328)
               

               
               nmm (0.796813)
               

               
               jej (0.395687)
               

               
               nep (0.36785)
               

               
               duo (0.345602)
               

               
               csp (0.322373)
               

               
               cga (0.279096)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               che (0.136314)
               

               
               cly (0.120642)

	83-567, gnl\|bosTau2\|chr16 (41280832-41280353)
	83-567, gnl\|Hg17\|chr1 (989430-989917)
	83-567, gnl\|Mm7\|chr17 (44535164-44534681)

	cag (2.57031)
	nje (1.49328)
	nmm (0.796813)
	jej (0.395687)
	nep (0.36785)
	duo (0.345602)
	csp (0.322373)
	cga (0.279096)
	mas (0.210305)
	fcc (0.197785)
	nlu (0.191681)
	che (0.136314)
	cly (0.120642)