Non-Coding RNA Search

Ss1.1-rnje26c_b22.5.5

Sequence:


               
               TTTTTTTTTTTTTAGTTTCTCAGCAGCTTTATTGAGTATGGAGAGGTAGTGTCACGGTCC
ACTGGACATGTATCCCTAGGTTTGTACAAGAACTGCTTTGGGACAGACAGACAGACAGGG
GGCAGGGCAGGGCAGGTGTCAGGGGTGGGGTGGGAGCACCAGGGGCAGCTCAGCCCTCCA
AAGGGGCCTGCGCCTTCTCCTGTGCAGGGAGGGCCTGGCTCTGGCCCTGGCTCGCCTCCT
CTTTGAGGGTGCTGAAGAAGGTGTTGACCTTGTCCCTCAGATCCTTCTCCAGGAAGCTCA
GGTGGCCCTCCACGTCCCCCGCCAAAGGGCCCAGCTTCTGCCTGAGATCCTCCACCTGCT
GCACCAAAGCTTTGTTGAAGGTCTCCCCGTAGGGCTCCACCTTGAGGCGGAACTCCTCCA
CCTGCTGGTCCAGGTGGCTTCTCAGCTCCAGCAGCGACTTCTGCAGCCCCTCGGTGTTGC
CCTTCAGATGGCCATGCACGTTCTCGGCCACCGGCACCAGCTTCTGCCGCAGCTCGTCGG
CATTGGCCGAGATCTTGGCCTTCAGCTCCTCTGCCTGCTTCTTCATCTGGAAGGCCAGGC
CCTCGAGCTGGTGGTTGAGCTTCTCCTGGACGTCCTGCGCATAGGGGGCCAGGCTGCGCC
GCAGCTCCTCCACGTTCTGATCGATCTTGGCCTTGAGCTCCTCCGCATAGGGCGTGAGGC
TCCCCTTGAGCTCCTCCACATTCTGATCGATCTTGGCCTTGAACTCATCCGCATAGGGTG
CCACGGAGGCCTCCAGGTTGCGGATGTTCTGCCGTAGCACGGACTCCATGCGCTCTGCGT
AGGGCTTCAGCTGGCGCTGCAGCTGCTGAACCTGGGTGTTGACCTGGGTGCGCAGCTCCT
CCGTAAAGGGCCCCAGGCGCTGCTGCAGCTCGCGCACGTTGTCTCCGATTTTCTGGCTCA
CCTCGGTAGCGTGGGGCAGCAGCCGGGCTCGCAGCTCCTCCAGCTCCCTTCGAATCTCCT
CCTTCAGCTTCTCTGAGTCCTTGGTCAGGCGTTCATGCAGCTCCGTGGCAAAGGGCACCA
GCTTCTTCTGCAGGTCCTCCGTGTAGGTGTTCACTTCCCCAAGTTTGTCCTGGAAGAGAG
TGTTGAGCTGCTGGGTGAGCTCAGACTTCTGGAGATGTTCCACAGCCTTCTTGGCATTGC
TGCCCAGCTGGCTGAAGTAGTCCCACATCACAGTAGCCACTTGGTCGGCATTGACCTCAG
CCCGGGCACCGGTGACGGCCACCAGGGCCAGGCTCAGGACCACAGCCTTCAGGAACATCC
TGAGCTCCCCGCTGGGCTGGAAGTGTCTCTTACTGCACTGGGTCCTCCGTGGAGGAGAGG
TTCTCAGGCAGCTCACCTGTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTAGTTTCTCAGCAGCTTTATTGAGTATGGAGAGGTAGTGTCACGGTCC
ACTGGACATGTATCCCTAGGTTTGTACAAGAACTGCTTTGGGACAGACAGACAGACAGGG
GGCAGGGCAGGGCAGGTGTCAGGGGTGGGGTGGGAGCACCAGGGGCAGCTCAGCCCTCCA
AAGGGGCCTGCGCCTTCTCCTGTGCAGGGAGGGCCTGGCTCTGGCCCTGGCTCGCCTCCT
CTTTGAGGGTGCTGAAGAAGGTGTTGACCTTGTCCCTCAGATCCTTCTCCAGGAAGCTCA
GGTGGCCCTCCACGTCCCCCGCCAAAGGGCCCAGCTTCTGCCTGAGATCCTCCACCTGCT
GCACCAAAGCTTTGTTGAAGGTCTCCCCGTAGGGCTCCACCTTGAGGCGGAACTCCTCCA
CCTGCTGGTCCAGGTGGCTTCTCAGCTCCAGCAGCGACTTCTGCAGCCCCTCGGTGTTGC
CCTTCAGATGGCCATGCACGTTCTCGGCCACCGGCACCAGCTTCTGCCGCAGCTCGTCGG
CATTGGCCGAGATCTTGGCCTTCAGCTCCTCTGCCTGCTTCTTCATCTGGAAGGCCAGGC
CCTCGAGCTGGTGGTTGAGCTTCTCCTGGACGTCCTGCGCATAGGGGGCCAGGCTGCGCC
GCAGCTCCTCCACGTTCTGATCGATCTTGGCCTTGAGCTCCTCCGCATAGGGCGTGAGGC
TCCCCTTGAGCTCCTCCACATTCTGATCGATCTTGGCCTTGAACTCATCCGCATAGGGTG
CCACGGAGGCCTCCAGGTTGCGGATGTTCTGCCGTAGCACGGACTCCATGCGCTCTGCGT
AGGGCTTCAGCTGGCGCTGCAGCTGCTGAACCTGGGTGTTGACCTGGGTGCGCAGCTCCT
CCGTAAAGGGCCCCAGGCGCTGCTGCAGCTCGCGCACGTTGTCTCCGATTTTCTGGCTCA
CCTCGGTAGCGTGGGGCAGCAGCCGGGCTCGCAGCTCCTCCAGCTCCCTTCGAATCTCCT
CCTTCAGCTTCTCTGAGTCCTTGGTCAGGCGTTCATGCAGCTCCGTGGCAAAGGGCACCA
GCTTCTTCTGCAGGTCCTCCGTGTAGGTGTTCACTTCCCCAAGTTTGTCCTGGAAGAGAG
TGTTGAGCTGCTGGGTGAGCTCAGACTTCTGGAGATGTTCCACAGCCTTCTTGGCATTGC
TGCCCAGCTGGCTGAAGTAGTCCCACATCACAGTAGCCACTTGGTCGGCATTGACCTCAG
CCCGGGCACCGGTGACGGCCACCAGGGCCAGGCTCAGGACCACAGCCTTCAGGAACATCC
TGAGCTCCCCGCTGGGCTGGAAGTGTCTCTTACTGCACTGGGTCCTCCGTGGAGGAGAGG
TTCTCAGGCAGCTCACCTGTGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               APOA4_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               APOA4_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               205-320, - strand, RNAz p=0.908152
               

               
               481-600, - strand, RNAz p=0.649559

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-320, - strand, RNAz p=0.908152
               

               
               481-600, - strand, RNAz p=0.649559

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               13-1145, gnl|bosTau2|chr15 (13215177-13214051)
               

               
               13-1145, gnl|Hg17|chr11 (116196633-116197810)
               

               
               13-1145, gnl|Mm7|chr9 (46201576-46200399)
               


               
               1267-1373, gnl|bosTau2|chr15 (13212566-13212460)
               

               
               1267-1373, gnl|Hg17|chr11 (116199066-116199172)
               

               
               1267-1373, gnl|Mm7|chr9 (46199328-46199223)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-1145, gnl|bosTau2|chr15 (13215177-13214051)
               

               
               13-1145, gnl|Hg17|chr11 (116196633-116197810)
               

               
               13-1145, gnl|Mm7|chr9 (46201576-46200399)
               


               
               1267-1373, gnl|bosTau2|chr15 (13212566-13212460)
               

               
               1267-1373, gnl|Hg17|chr11 (116199066-116199172)
               

               
               1267-1373, gnl|Mm7|chr9 (46199328-46199223)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               nje (16.7579)
               

               
               jej (8.60619)
               

               
               duo (1.90081)
               

               
               eje (1.58134)
               

               
               cbl (0.229595)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               ute (0.132784)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (16.7579)
               

               
               jej (8.60619)
               

               
               duo (1.90081)
               

               
               eje (1.58134)
               

               
               cbl (0.229595)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               ute (0.132784)

	205-320, - strand, RNAz p=0.908152
	481-600, - strand, RNAz p=0.649559

	13-1145, gnl\|bosTau2\|chr15 (13215177-13214051)
	13-1145, gnl\|Hg17\|chr11 (116196633-116197810)
	13-1145, gnl\|Mm7\|chr9 (46201576-46200399)

	1267-1373, gnl\|bosTau2\|chr15 (13212566-13212460)
	1267-1373, gnl\|Hg17\|chr11 (116199066-116199172)
	1267-1373, gnl\|Mm7\|chr9 (46199328-46199223)

	nje (16.7579)
	jej (8.60619)
	duo (1.90081)
	eje (1.58134)
	cbl (0.229595)
	nep (0.183925)
	ill (0.175593)
	cje (0.165235)
	ute (0.132784)