Non-Coding RNA Search

Ss1.1-rnje28c_n23.5

Sequence:


               
               ACTACGTGGAGAGTATACTGGCCCATAGGTCAGTTCCAGGAGCGGCAAGGCCACCTTCCC
CTTAGAAAAAGCCCTGGGTCTGGAGATTTAGTGTCCTGGTGGAAGAGGGGAAAGGGCACC
TGGGGCTGGGCCATTTGAGGGTCTGTGCTCACATCCAAGTTCATTAGCTTCTTGGGTATT
TTCACTGCTATGCCTAGTACCCCTGTCTCCCACTTGCTCCCCATTCCCAGCCACAGCCTC
CTGCCCTGAGCTGCTCCATGAACTCCGGGCCTTTTTCCACCAGCAGGTGCATTAATGTCT
AAGATAGCCTTCTAGAGAGAGGCCAGAAGGCCCACACCAAATGTCAAAAGCTTGTCATTA
CCTTTCTCCATGTCTGTCCTTCCTACCTTCTGGGCATTTCATTCTGTCTCTGCATCCATT
AAAACACATCATTAAGCACCAACCATATGCAACCTGCTGTGCGTAATAAACGCTGACTCA
GACATGGATCCTGACCTGCAAGGTCTGTAGTTCAGTAAAGAAAACAAAGCAGAAACACGA
ATAATTTGATCAAAAGGAAAAGTGATGTATGACATAAGGAGCCCAAGAAATTGATTTGCG
TGGATGCTGAACTGTGCTAGGCTTCTGCATGCACCGGGACACAAGTGAGGGATCCCTAGA
ACATGGCTCGTGGGAGGAAGGGTACTAGCTGCTGTGTGCATGTGTGTTCCTTGGTGCAGG
TCTGCTCCACAACTGAACTGGGGCTGGGTTGCTCACGAGGCTGGAATACTGGGACTACAC
AGTCCACAGTTAATAAACATGTTCCTGTTTACACATCTATTTTCAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTACGTGGAGAGTATACTGGCCCATAGGTCAGTTCCAGGAGCGGCAAGGCCACCTTCCC
CTTAGAAAAAGCCCTGGGTCTGGAGATTTAGTGTCCTGGTGGAAGAGGGGAAAGGGCACC
TGGGGCTGGGCCATTTGAGGGTCTGTGCTCACATCCAAGTTCATTAGCTTCTTGGGTATT
TTCACTGCTATGCCTAGTACCCCTGTCTCCCACTTGCTCCCCATTCCCAGCCACAGCCTC
CTGCCCTGAGCTGCTCCATGAACTCCGGGCCTTTTTCCACCAGCAGGTGCATTAATGTCT
AAGATAGCCTTCTAGAGAGAGGCCAGAAGGCCCACACCAAATGTCAAAAGCTTGTCATTA
CCTTTCTCCATGTCTGTCCTTCCTACCTTCTGGGCATTTCATTCTGTCTCTGCATCCATT
AAAACACATCATTAAGCACCAACCATATGCAACCTGCTGTGCGTAATAAACGCTGACTCA
GACATGGATCCTGACCTGCAAGGTCTGTAGTTCAGTAAAGAAAACAAAGCAGAAACACGA
ATAATTTGATCAAAAGGAAAAGTGATGTATGACATAAGGAGCCCAAGAAATTGATTTGCG
TGGATGCTGAACTGTGCTAGGCTTCTGCATGCACCGGGACACAAGTGAGGGATCCCTAGA
ACATGGCTCGTGGGAGGAAGGGTACTAGCTGCTGTGTGCATGTGTGTTCCTTGGTGCAGG
TCTGCTCCACAACTGAACTGGGGCTGGGTTGCTCACGAGGCTGGAATACTGGGACTACAC
AGTCCACAGTTAATAAACATGTTCCTGTTTACACATCTATTTTCAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-214, - strand, RNAz p=0.578889

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-214, - strand, RNAz p=0.578889

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-503, gnl|bosTau2|chr1 (30123125-30123612)
               

               
               3-503, gnl|Hg17|chr3 (121018973-121019585)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-503, gnl|bosTau2|chr1 (30123125-30123612)
               

               
               3-503, gnl|Hg17|chr3 (121018973-121019585)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cki (0.330469)
               

               
               kid (0.259471)
               

               
               fli (0.202881)
               

               
               nje (0.16592)
               

               
               lun (0.150489)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               kid (0.259471)
               

               
               fli (0.202881)
               

               
               nje (0.16592)
               

               
               lun (0.150489)

	3-503, gnl\|bosTau2\|chr1 (30123125-30123612)
	3-503, gnl\|Hg17\|chr3 (121018973-121019585)

	cki (0.330469)
	kid (0.259471)
	fli (0.202881)
	nje (0.16592)
	lun (0.150489)