Non-Coding RNA Search

Ss1.1-rnje29c_c12.5

Sequence:


               
               GCGTCCACACCCCTCATGCTGTGAGACATGGGGGGCATTGGGGGCACCGGACTGAGCAAA
GGGGACCACTCTGTTTTCCCAACAGCCCAGTGGAATGGCGCTCTCCTGGGTCCTCCAAGC
CATATCGAAAGAACTGGAAAATCCAGTTAACCAGCCTCTCCCCCATCTCCCCCCACACAC
CTGTGCTGAGTGGGGAGTAGAAGGCAGGCCAGGTAAGGAGAGGCCAGGGGCTTCAGACGT
TGCTCCTGTCCATCCGAGAAGCAAGAAGCGAGGTGGCCACAATGGCAACTGGGCTGCCCC
TCGTCCTCCTCCTGACCCTCCTCGGCAGCTCACAGGGAACAGGGCCGGGAATGACTTTGC
GACTGAAGCTGAAGGAAACCTTTCTAGCAGATTCTTCCTATGACTCCAGCTTCTTGGAAC
TGCTTGAGAAGCTTTGCCTCCTCCTCCACCTTCCATCAGGGACCAACGTCACCCTTCATC
AGGCAGGATCCCTACACCACGTCACCTGCCGAGTTTGAGAACAGTCGAAGCCTGTGCCCC
TCTCCGCCAGGCCTTCTGTCCCCAGGCTGCAGAGGGAATGCACTGGCCTTGCCTTCCAGC
ATGTTCTCACACTGCTGAGTGGTAGTAAATATGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTCCACACCCCTCATGCTGTGAGACATGGGGGGCATTGGGGGCACCGGACTGAGCAAA
GGGGACCACTCTGTTTTCCCAACAGCCCAGTGGAATGGCGCTCTCCTGGGTCCTCCAAGC
CATATCGAAAGAACTGGAAAATCCAGTTAACCAGCCTCTCCCCCATCTCCCCCCACACAC
CTGTGCTGAGTGGGGAGTAGAAGGCAGGCCAGGTAAGGAGAGGCCAGGGGCTTCAGACGT
TGCTCCTGTCCATCCGAGAAGCAAGAAGCGAGGTGGCCACAATGGCAACTGGGCTGCCCC
TCGTCCTCCTCCTGACCCTCCTCGGCAGCTCACAGGGAACAGGGCCGGGAATGACTTTGC
GACTGAAGCTGAAGGAAACCTTTCTAGCAGATTCTTCCTATGACTCCAGCTTCTTGGAAC
TGCTTGAGAAGCTTTGCCTCCTCCTCCACCTTCCATCAGGGACCAACGTCACCCTTCATC
AGGCAGGATCCCTACACCACGTCACCTGCCGAGTTTGAGAACAGTCGAAGCCTGTGCCCC
TCTCCGCCAGGCCTTCTGTCCCCAGGCTGCAGAGGGAATGCACTGGCCTTGCCTTCCAGC
ATGTTCTCACACTGCTGAGTGGTAGTAAATATGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               U541_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               U541_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-228, - strand, RNAz p=0.937209

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-228, - strand, RNAz p=0.937209

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-343, gnl|bosTau2|chr23 (20646747-20647093)
               

               
               5-343, gnl|Hg17|chr6 (31008128-31007791)
               

               
               5-343, gnl|Mm7|chr17 (33750357-33750637)
               


               
               430-636, gnl|bosTau2|chr23 (20647541-20647748)
               

               
               430-636, gnl|Hg17|chr6 (31007332-31007116)
               

               
               430-636, gnl|Mm7|chr17 (33751080-33751269)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-343, gnl|bosTau2|chr23 (20646747-20647093)
               

               
               5-343, gnl|Hg17|chr6 (31008128-31007791)
               

               
               5-343, gnl|Mm7|chr17 (33750357-33750637)
               


               
               430-636, gnl|bosTau2|chr23 (20647541-20647748)
               

               
               430-636, gnl|Hg17|chr6 (31007332-31007116)
               

               
               430-636, gnl|Mm7|chr17 (33751080-33751269)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               nje (0.16592)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               nje (0.16592)

	5-343, gnl\|bosTau2\|chr23 (20646747-20647093)
	5-343, gnl\|Hg17\|chr6 (31008128-31007791)
	5-343, gnl\|Mm7\|chr17 (33750357-33750637)

	430-636, gnl\|bosTau2\|chr23 (20647541-20647748)
	430-636, gnl\|Hg17\|chr6 (31007332-31007116)
	430-636, gnl\|Mm7\|chr17 (33751080-33751269)