Non-Coding RNA Search

Ss1.1-rnje30c_c8.5

Sequence:


               
               TGCTGGGAGAAGGAAAGCCAGGTGCCATCCTTCCATAGGCAAATGTGGGAACCAGCCTGA
CGACGGTAATTAAACTGCCAAACCTGGGGCCCAGCAGGCTTTGAGAAACCTCCTGTATAT
GCCCTGGAGATGGATGGATAAGTTTTCAGATTCCTGGGAGCAGGTGCCAGTGCCCTGTCA
GCTCCTTCCAAAGTTTTCTCTTAGCAGCTGCAGGCAGACATTGGGCCACTGCTGAAGAGG
CGGAGGGGGATGTGGCCTGGGTGTGACGCTGGTTTCCTGCAGCTGTAGTCCTTTGCAGGC
CTTTCATTCCCCTGAGAGGCTAGGCCTCCGGGGCCACTCTGGCTTCTCTCTTCTGGGTAG
AGGGGCGCAGGCCTGGACTAGTGAGGGGGAAGGTTGTTTGTTGATTACTTTCCTGTCTGT
AGCGCCTGCTGTTGGAAAGGGCGAGTTGACAGTGTTTGGAGGTGGGCGAGGAGCTCGCAA
ATTGCACGTGTTTAGGATGGCATCATGCATGCGGTGCAGACTGGCAGAGGGTATGTGAAG
TCTCGAGAAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGGGAGAAGGAAAGCCAGGTGCCATCCTTCCATAGGCAAATGTGGGAACCAGCCTGA
CGACGGTAATTAAACTGCCAAACCTGGGGCCCAGCAGGCTTTGAGAAACCTCCTGTATAT
GCCCTGGAGATGGATGGATAAGTTTTCAGATTCCTGGGAGCAGGTGCCAGTGCCCTGTCA
GCTCCTTCCAAAGTTTTCTCTTAGCAGCTGCAGGCAGACATTGGGCCACTGCTGAAGAGG
CGGAGGGGGATGTGGCCTGGGTGTGACGCTGGTTTCCTGCAGCTGTAGTCCTTTGCAGGC
CTTTCATTCCCCTGAGAGGCTAGGCCTCCGGGGCCACTCTGGCTTCTCTCTTCTGGGTAG
AGGGGCGCAGGCCTGGACTAGTGAGGGGGAAGGTTGTTTGTTGATTACTTTCCTGTCTGT
AGCGCCTGCTGTTGGAAAGGGCGAGTTGACAGTGTTTGGAGGTGGGCGAGGAGCTCGCAA
ATTGCACGTGTTTAGGATGGCATCATGCATGCGGTGCAGACTGGCAGAGGGTATGTGAAG
TCTCGAGAAGAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-272, - strand, RNAz p=0.936036
               

               
               313-432, + strand, RNAz p=0.915049

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-272, - strand, RNAz p=0.936036
               

               
               313-432, + strand, RNAz p=0.915049

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001991, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001991, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-551, gnl|bosTau2|chr19 (39011163-39011713)
               

               
               2-551, gnl|Hg17|chr17 (38107463-38106917)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-551, gnl|bosTau2|chr19 (39011163-39011713)
               

               
               2-551, gnl|Hg17|chr17 (38107463-38106917)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               clu (0.119646)

	2-272, - strand, RNAz p=0.936036
	313-432, + strand, RNAz p=0.915049

	2-551, gnl\|bosTau2\|chr19 (39011163-39011713)
	2-551, gnl\|Hg17\|chr17 (38107463-38106917)