Non-Coding RNA Search

Ss1.1-rnje30c_k18.5

Sequence:


               
               GGGCAGCGCTGCGGGTGATCGAGAAGGAGATCAAGGACGTGTTCGCCGTGTACGGTATCG
CCGTGGACCCCCGCCACCTCTCCCTGGTCGCTGACTATATGTGCTTCGAGGGTGTTTACA
AGCCACTGAACCGCTTTGGGATCCGGTCCAACTCCTCCCCTCTGCAGCAGATGACGTTTG
AAACCAGCTTCCAATTTCTGAAGCAGGCCACCATGATGGGGTCCCACGACGAGCTGAGGT
CTCCGTCCGCCTGCCTCGTGGTCGGGAAGGTTGTCAGAGGTGGGACGGGCCTGTTTGAGC
TCAAGCAGCCCCTGAGATAACAGCCTCCATGCACCCTGCGCCTGGCCTGCTGAGAACCAG
GGACTGGTGACAGCGCAGAGCCTGGCAGTAACCTTGGGGGAGTCCAAAGAGCAACTGGCC
TCTGGGCTGGACCAGCTTCACCTGGGAAGTGGCTGCATTGCTCATCCTTGCTCCCCTCCA
TCTCAGGATGCAAACATTCTCCTCCAAGTCAGTCATCAAGGTGGCCAGACCTCCCCGCTG
TGCTACAGGAGGCCTCAGAGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAGCGCTGCGGGTGATCGAGAAGGAGATCAAGGACGTGTTCGCCGTGTACGGTATCG
CCGTGGACCCCCGCCACCTCTCCCTGGTCGCTGACTATATGTGCTTCGAGGGTGTTTACA
AGCCACTGAACCGCTTTGGGATCCGGTCCAACTCCTCCCCTCTGCAGCAGATGACGTTTG
AAACCAGCTTCCAATTTCTGAAGCAGGCCACCATGATGGGGTCCCACGACGAGCTGAGGT
CTCCGTCCGCCTGCCTCGTGGTCGGGAAGGTTGTCAGAGGTGGGACGGGCCTGTTTGAGC
TCAAGCAGCCCCTGAGATAACAGCCTCCATGCACCCTGCGCCTGGCCTGCTGAGAACCAG
GGACTGGTGACAGCGCAGAGCCTGGCAGTAACCTTGGGGGAGTCCAAAGAGCAACTGGCC
TCTGGGCTGGACCAGCTTCACCTGGGAAGTGGCTGCATTGCTCATCCTTGCTCCCCTCCA
TCTCAGGATGCAAACATTCTCCTCCAAGTCAGTCATCAAGGTGGCCAGACCTCCCCGCTG
TGCTACAGGAGGCCTCAGAGGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5911933|emb|CAB55942.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5911933|emb|CAB55942.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               54-220, gnl|bosTau2|chr11 (33894055-33894221)
               

               
               54-220, gnl|Hg17|chr2 (86166831-86166665)
               

               
               54-220, gnl|Mm7|chr6 (71995874-71996040)
               


               
               367-490, gnl|bosTau2|chr11 (33894766-33894887)
               

               
               367-490, gnl|canFam2|chr17 (42134697-42134481)
               

               
               367-490, gnl|hg17|chr2 (86165868-86166144)
               

               
               367-490, gnl|Hg17|chr2 (86166094-86165976)
               

               
               367-490, gnl|loxAfr1|scaffold_26630 (16775-17032)
               

               
               367-490, gnl|mm7|chr6 (71996704-71996489)
               

               
               367-490, gnl|Mm7|chr6 (71996503-71996610)
               

               
               367-490, gnl|monDom2|scaffold_63 (250717-250922)
               

               
               367-490, gnl|oryCun1|scaffold_210171 (148009-148256)
               

               
               367-490, gnl|panTro1|chr12 (89043774-89044050)
               

               
               367-490, gnl|rheMac2|chr13 (86614939-86615213)
               

               
               367-490, gnl|rn3|chr4 (105495316-105495101)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-220, gnl|bosTau2|chr11 (33894055-33894221)
               

               
               54-220, gnl|Hg17|chr2 (86166831-86166665)
               

               
               54-220, gnl|Mm7|chr6 (71995874-71996040)
               


               
               367-490, gnl|bosTau2|chr11 (33894766-33894887)
               

               
               367-490, gnl|canFam2|chr17 (42134697-42134481)
               

               
               367-490, gnl|hg17|chr2 (86165868-86166144)
               

               
               367-490, gnl|Hg17|chr2 (86166094-86165976)
               

               
               367-490, gnl|loxAfr1|scaffold_26630 (16775-17032)
               

               
               367-490, gnl|mm7|chr6 (71996704-71996489)
               

               
               367-490, gnl|Mm7|chr6 (71996503-71996610)
               

               
               367-490, gnl|monDom2|scaffold_63 (250717-250922)
               

               
               367-490, gnl|oryCun1|scaffold_210171 (148009-148256)
               

               
               367-490, gnl|panTro1|chr12 (89043774-89044050)
               

               
               367-490, gnl|rheMac2|chr13 (86614939-86615213)
               

               
               367-490, gnl|rn3|chr4 (105495316-105495101)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	54-220, gnl\|bosTau2\|chr11 (33894055-33894221)
	54-220, gnl\|Hg17\|chr2 (86166831-86166665)
	54-220, gnl\|Mm7\|chr6 (71995874-71996040)

	367-490, gnl\|bosTau2\|chr11 (33894766-33894887)
	367-490, gnl\|canFam2\|chr17 (42134697-42134481)
	367-490, gnl\|hg17\|chr2 (86165868-86166144)
	367-490, gnl\|Hg17\|chr2 (86166094-86165976)
	367-490, gnl\|loxAfr1\|scaffold_26630 (16775-17032)
	367-490, gnl\|mm7\|chr6 (71996704-71996489)
	367-490, gnl\|Mm7\|chr6 (71996503-71996610)
	367-490, gnl\|monDom2\|scaffold_63 (250717-250922)
	367-490, gnl\|oryCun1\|scaffold_210171 (148009-148256)
	367-490, gnl\|panTro1\|chr12 (89043774-89044050)
	367-490, gnl\|rheMac2\|chr13 (86614939-86615213)
	367-490, gnl\|rn3\|chr4 (105495316-105495101)