Ss1.1-rnje30c_o19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAAAATGGAACATGTTAAAGGATGAAGATAAAGATCTTTTCCCTTTACTTGAGTGCCTA TCATCAGTTGCCACAGCCCTGCAGTCTGGCTTCCTTCCATACTGTGAACCTGTGTATCAA CGTTGTGTAAACCTAGTACAGAAGACTCTTGCACAAGCCATGCTGAACAATGCTCAACCA GATCAATATGAGGCTCCTGATAAAGATTTTATGATAGTGGCTCTTGATTTACTCAGTGGC CTGGCTGAAGGACTTGGAGGCAACATTGAACAGCTAGTAGCCCGAAGTAACATTCTAACA CTAATGTATCAGTGCATGCAGGATAAAATGCCAGAAGTTCGACAGAGTTCCTTTGCCCTG TTAGGTGACCTGACAAAAGCTTGCTTTCAGCATGTTAAGCCCTGTATAGCTGATTTCATG CCAATATTGGGAACCAACCTAAATCCAGAGTTCATTTCAGTCTGCAATAACGCCACATGG GCAATTGGCGAAATCTCCATTCAAATGGGTATAGAGATGCAGCCTTATATTCCTATGGTG TTGCACCAGCTTGTAGAAATCATTAACAGACCCAACACACCAAAGACGTTGTTAGAGAAT ACAGGTACCATATGACTGAACTGTTACGGTGAAGAGAAAATTATTTGCCTTTAATTTTAA ATTGAGACGTGTAGAGAAGCCAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAAAATGGAACATGTTAAAGGATGAAGATAAAGATCTTTTCCCTTTACTTGAGTGCCTA TCATCAGTTGCCACAGCCCTGCAGTCTGGCTTCCTTCCATACTGTGAACCTGTGTATCAA CGTTGTGTAAACCTAGTACAGAAGACTCTTGCACAAGCCATGCTGAACAATGCTCAACCA GATCAATATGAGGCTCCTGATAAAGATTTTATGATAGTGGCTCTTGATTTACTCAGTGGC CTGGCTGAAGGACTTGGAGGCAACATTGAACAGCTAGTAGCCCGAAGTAACATTCTAACA CTAATGTATCAGTGCATGCAGGATAAAATGCCAGAAGTTCGACAGAGTTCCTTTGCCCTG TTAGGTGACCTGACAAAAGCTTGCTTTCAGCATGTTAAGCCCTGTATAGCTGATTTCATG CCAATATTGGGAACCAACCTAAATCCAGAGTTCATTTCAGTCTGCAATAACGCCACATGG GCAATTGGCGAAATCTCCATTCAAATGGGTATAGAGATGCAGCCTTATATTCCTATGGTG TTGCACCAGCTTGTAGAAATCATTAACAGACCCAACACACCAAAGACGTTGTTAGAGAAT ACAGGTACCATATGACTGAACTGTTACGGTGAAGAGAAAATTATTTGCCTTTAATTTTAA ATTGAGACGTGTAGAGAAGCCAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 162-280, + strand, RNAz p=0.548728 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 162-280, + strand, RNAz p=0.548728 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 162-322, gnl|bosTau2|chr20 (5282405-5282565) | |
| 162-322, gnl|canFam2|chr2 (58712662-58712817) | |
| 162-322, gnl|canFam2|chr2 (58712646-58712825) | |
| 162-322, gnl|danRer3|chr5 (31240488-31240643) | |
| 162-322, gnl|danRer3|chr5 (33798705-33798900) | |
| 162-322, gnl|dasNov1|scaffold_49174 (7771-7926) | |
| 162-322, gnl|dasNov1|scaffold_49174 (7771-7927) | |
| 162-322, gnl|echTel1|scaffold_315405 (32575-32730) | |
| 162-322, gnl|echTel1|scaffold_315405 (32559-32769) | |
| 162-322, gnl|fr1|chrUn (74076470-74076625) | |
| 162-322, gnl|fr1|chrUn (74076462-74076678) | |
| 162-322, gnl|galGal2|chrZ (11257497-11257652) | |
| 162-322, gnl|galGal2|chrZ (11257476-11257672) | |
| 162-322, gnl|hg17|chr10 (86140984-86141139) | |
| 162-322, gnl|hg17|chr5 (72224943-72225155) | |
| 162-322, gnl|Hg17|chr5 (72224959-72225119) | |
| 162-322, gnl|loxAfr1|scaffold_619 (111262-111107) | |
| 162-322, gnl|loxAfr1|scaffold_619 (111278-111068) | |
| 162-322, gnl|mm7|chr13 (95925268-95925113) | |
| 162-322, gnl|mm7|chr13 (95925268-95925105) | |
| 162-322, gnl|Mm7|chr13 (95925267-95925108) | |
| 162-322, gnl|monDom2|scaffold_60 (6143755-6143910) | |
| 162-322, gnl|monDom2|scaffold_60 (6143739-6143947) | |
| 162-322, gnl|oryCun1|scaffold_190253 (3148-3340) | |
| 162-322, gnl|oryCun1|scaffold_190253 (3182-3348) | |
| 162-322, gnl|panTro1|chr4 (43239213-43239032) | |
| 162-322, gnl|panTro1|chr8 (87700834-87700989) | |
| 162-322, gnl|rheMac2|chr6 (69051818-69051999) | |
| 162-322, gnl|rheMac2|chr9 (52890105-52889951) | |
| 162-322, gnl|rn3|chr2 (29413240-29413085) | |
| 162-322, gnl|rn3|chr2 (29413258-29413077) | |
| 162-322, gnl|tetNig1|chr18 (2039904-2039724) | |
| 162-322, gnl|tetNig1|chr18 (2039894-2039631) | |
| 162-322, gnl|xenTro1|scaffold_120 (806130-806285) | |
| 162-322, gnl|xenTro1|scaffold_120 (806124-806341) | |
| 508-682, gnl|bosTau2|chr20 (5285699-5285875) | |
| 508-682, gnl|canFam2|chr2 (58715846-58716036) | |
| 508-682, gnl|danRer3|chr5 (33801381-33801513) | |
| 508-682, gnl|dasNov1|scaffold_49174 (11066-11251) | |
| 508-682, gnl|echTel1|scaffold_315405 (34879-35064) | |
| 508-682, gnl|fr1|chrUn (74077053-74077214) | |
| 508-682, gnl|galGal2|chrZ (11261961-11262157) | |
| 508-682, gnl|hg17|chr5 (72228567-72228756) | |
| 508-682, gnl|Hg17|chr5 (72228638-72228808) | |
| 508-682, gnl|loxAfr1|scaffold_619 (107947-107763) | |
| 508-682, gnl|mm7|chr13 (95922812-95922637) | |
| 508-682, gnl|Mm7|chr13 (95922748-95922578) | |
| 508-682, gnl|monDom2|scaffold_60 (6145322-6145494) | |
| 508-682, gnl|oryCun1|scaffold_211995 (4271-4454) | |
| 508-682, gnl|panTro1|chr4 (43235594-43235405) | |
| 508-682, gnl|rheMac2|chr6 (69055432-69055618) | |
| 508-682, gnl|rn3|chr2 (29410980-29410805) | |
| 508-682, gnl|tetNig1|chr18 (2039177-2039017) | |
| 508-682, gnl|xenTro1|scaffold_120 (808287-808495) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 162-322, gnl|bosTau2|chr20 (5282405-5282565) | |
| 162-322, gnl|canFam2|chr2 (58712662-58712817) | |
| 162-322, gnl|canFam2|chr2 (58712646-58712825) | |
| 162-322, gnl|danRer3|chr5 (31240488-31240643) | |
| 162-322, gnl|danRer3|chr5 (33798705-33798900) | |
| 162-322, gnl|dasNov1|scaffold_49174 (7771-7926) | |
| 162-322, gnl|dasNov1|scaffold_49174 (7771-7927) | |
| 162-322, gnl|echTel1|scaffold_315405 (32575-32730) | |
| 162-322, gnl|echTel1|scaffold_315405 (32559-32769) | |
| 162-322, gnl|fr1|chrUn (74076470-74076625) | |
| 162-322, gnl|fr1|chrUn (74076462-74076678) | |
| 162-322, gnl|galGal2|chrZ (11257497-11257652) | |
| 162-322, gnl|galGal2|chrZ (11257476-11257672) | |
| 162-322, gnl|hg17|chr10 (86140984-86141139) | |
| 162-322, gnl|hg17|chr5 (72224943-72225155) | |
| 162-322, gnl|Hg17|chr5 (72224959-72225119) | |
| 162-322, gnl|loxAfr1|scaffold_619 (111262-111107) | |
| 162-322, gnl|loxAfr1|scaffold_619 (111278-111068) | |
| 162-322, gnl|mm7|chr13 (95925268-95925113) | |
| 162-322, gnl|mm7|chr13 (95925268-95925105) | |
| 162-322, gnl|Mm7|chr13 (95925267-95925108) | |
| 162-322, gnl|monDom2|scaffold_60 (6143755-6143910) | |
| 162-322, gnl|monDom2|scaffold_60 (6143739-6143947) | |
| 162-322, gnl|oryCun1|scaffold_190253 (3148-3340) | |
| 162-322, gnl|oryCun1|scaffold_190253 (3182-3348) | |
| 162-322, gnl|panTro1|chr4 (43239213-43239032) | |
| 162-322, gnl|panTro1|chr8 (87700834-87700989) | |
| 162-322, gnl|rheMac2|chr6 (69051818-69051999) | |
| 162-322, gnl|rheMac2|chr9 (52890105-52889951) | |
| 162-322, gnl|rn3|chr2 (29413240-29413085) | |
| 162-322, gnl|rn3|chr2 (29413258-29413077) | |
| 162-322, gnl|tetNig1|chr18 (2039904-2039724) | |
| 162-322, gnl|tetNig1|chr18 (2039894-2039631) | |
| 162-322, gnl|xenTro1|scaffold_120 (806130-806285) | |
| 162-322, gnl|xenTro1|scaffold_120 (806124-806341) | |
| 508-682, gnl|bosTau2|chr20 (5285699-5285875) | |
| 508-682, gnl|canFam2|chr2 (58715846-58716036) | |
| 508-682, gnl|danRer3|chr5 (33801381-33801513) | |
| 508-682, gnl|dasNov1|scaffold_49174 (11066-11251) | |
| 508-682, gnl|echTel1|scaffold_315405 (34879-35064) | |
| 508-682, gnl|fr1|chrUn (74077053-74077214) | |
| 508-682, gnl|galGal2|chrZ (11261961-11262157) | |
| 508-682, gnl|hg17|chr5 (72228567-72228756) | |
| 508-682, gnl|Hg17|chr5 (72228638-72228808) | |
| 508-682, gnl|loxAfr1|scaffold_619 (107947-107763) | |
| 508-682, gnl|mm7|chr13 (95922812-95922637) | |
| 508-682, gnl|Mm7|chr13 (95922748-95922578) | |
| 508-682, gnl|monDom2|scaffold_60 (6145322-6145494) | |
| 508-682, gnl|oryCun1|scaffold_211995 (4271-4454) | |
| 508-682, gnl|panTro1|chr4 (43235594-43235405) | |
| 508-682, gnl|rheMac2|chr6 (69055432-69055618) | |
| 508-682, gnl|rn3|chr2 (29410980-29410805) | |
| 508-682, gnl|tetNig1|chr18 (2039177-2039017) | |
| 508-682, gnl|xenTro1|scaffold_120 (808287-808495) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| mgp (0.230681) | |
| duo (0.172801) | |
| nje (0.16592) | |
| csk (0.140746) | |
| tra (0.123092) | |
| eep (0.122564) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.230681) | |
| duo (0.172801) | |
| nje (0.16592) | |
| csk (0.140746) | |
| tra (0.123092) | |
| eep (0.122564) |