Non-Coding RNA Search

Ss1.1-rnje31c_p15.5

Sequence:


               
               AATTTTCTCGTCTGCAAAAGGATAATACTAGGACAAACTAAAGCCACACATCATAGACTC
AGTGGAGACGTTAGATCATTTTATTCCATGTGTTCTCTGCCTTTCCTGCTGCCAAACATC
CGTGGTGTGGCTTCTTCCCTTAAACCAGCTAGAAGGTCTTTACGTTTTTCTTTTTATTTG
AAGTGCTTTCTTATTGTTCCCATCAAGAGAGGTGGAAGTGAGTCACTTTATTAGATCTCC
TGAGTTTTTTGTTAGCTTTCTTGATTGATGTAGCATCGCTGTTTTAGTGCTCTTTAATCA
CCCTTAGTTGGACTGCTGTGTCAATTCCGTATGGAGTTTAGATCCTTGTCCTTGGTCCCT
GTATCCTCTCTGAAGCCCTCTGTTCTTTCGGCTCATGCAAGAGGCCAGCCGTACGATCTC
CTTCCGACTCAGCCTCTGTTCCCTGATCCTGTCTGACACTCACACAGCTGCTCCCAGCAC
CCATGCTGCTTTTGAGAGGGGTGATGTGTATTCTCTCTGTTCTCAGGCCCTGTCCAGCAG
CGTCAGCTCCAGCAAGCTGTTCTCCAGCAGCACAGCCCCTCACGAGACCTCCTTTGGAGA
AGAGGTGGAGGTGCATAACCTCCTTATCATTGACCAGCACACCTTTGAAGGTGCAAATGA
GCTCTTTCTATCATTTTGTACCTACATTCTCCTGAAGGTCTCCTGCAAGCTGGGCAAAGA
CCCCAACACGTACTTCATCGTGGGCACGGCCATGGTGTATCCCGAAGAGGCGGAGCCCAA
GCAGGGTCGGATTGTGGTCTTTCAGTATTCAGATGGAAAACTACAGACGGTGGCTGAAAA
GGAGGTGAAAGGGGCCGTGTACTCGATGGTGGAATTTAACGGGAAGCTCTTAGCCAGCAT
CAACAGCACGGTGCGGCTCTACGAGTGGACGACGGAGAAGGAGCTCCGCACCGAGTGCAA
TCACTACAACAACATCATGGCGCTCTACCTGAAGACCAAGGGCGACTTCATCCTGGTGGG
CGACCTCATGCGCTCCGTGCTGCTGCTGGCCTACAAGCCCATGGAGGGCAACTTCGAAGA
GATTGCTCGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTTCTCGTCTGCAAAAGGATAATACTAGGACAAACTAAAGCCACACATCATAGACTC
AGTGGAGACGTTAGATCATTTTATTCCATGTGTTCTCTGCCTTTCCTGCTGCCAAACATC
CGTGGTGTGGCTTCTTCCCTTAAACCAGCTAGAAGGTCTTTACGTTTTTCTTTTTATTTG
AAGTGCTTTCTTATTGTTCCCATCAAGAGAGGTGGAAGTGAGTCACTTTATTAGATCTCC
TGAGTTTTTTGTTAGCTTTCTTGATTGATGTAGCATCGCTGTTTTAGTGCTCTTTAATCA
CCCTTAGTTGGACTGCTGTGTCAATTCCGTATGGAGTTTAGATCCTTGTCCTTGGTCCCT
GTATCCTCTCTGAAGCCCTCTGTTCTTTCGGCTCATGCAAGAGGCCAGCCGTACGATCTC
CTTCCGACTCAGCCTCTGTTCCCTGATCCTGTCTGACACTCACACAGCTGCTCCCAGCAC
CCATGCTGCTTTTGAGAGGGGTGATGTGTATTCTCTCTGTTCTCAGGCCCTGTCCAGCAG
CGTCAGCTCCAGCAAGCTGTTCTCCAGCAGCACAGCCCCTCACGAGACCTCCTTTGGAGA
AGAGGTGGAGGTGCATAACCTCCTTATCATTGACCAGCACACCTTTGAAGGTGCAAATGA
GCTCTTTCTATCATTTTGTACCTACATTCTCCTGAAGGTCTCCTGCAAGCTGGGCAAAGA
CCCCAACACGTACTTCATCGTGGGCACGGCCATGGTGTATCCCGAAGAGGCGGAGCCCAA
GCAGGGTCGGATTGTGGTCTTTCAGTATTCAGATGGAAAACTACAGACGGTGGCTGAAAA
GGAGGTGAAAGGGGCCGTGTACTCGATGGTGGAATTTAACGGGAAGCTCTTAGCCAGCAT
CAACAGCACGGTGCGGCTCTACGAGTGGACGACGGAGAAGGAGCTCCGCACCGAGTGCAA
TCACTACAACAACATCATGGCGCTCTACCTGAAGACCAAGGGCGACTTCATCCTGGTGGG
CGACCTCATGCGCTCCGTGCTGCTGCTGGCCTACAAGCCCATGGAGGGCAACTTCGAAGA
GATTGCTCGAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               538-657, - strand, RNAz p=0.579793

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               538-657, - strand, RNAz p=0.579793

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               3-697, gnl|bosTau2|chr29 (30882891-30882188)
               

               
               3-697, gnl|Hg17|chr11 (60834966-60834297)
               


               
               910-1086, gnl|bosTau2|chr29 (30877144-30876968)
               

               
               910-1086, gnl|canFam2|chr18 (58123297-58123111)
               

               
               910-1086, gnl|danRer3|chr11 (9091466-9091651)
               

               
               910-1086, gnl|echTel1|scaffold_300880 (644-464)
               

               
               910-1086, gnl|fr1|chrUn (5418153-5418338)
               

               
               910-1086, gnl|galGal2|chr5 (3085534-3085729)
               

               
               910-1086, gnl|hg17|chr11 (60827900-60828092)
               

               
               910-1086, gnl|Hg17|chr11 (60828084-60827900)
               

               
               910-1086, gnl|mm7|chr19 (10306899-10306710)
               

               
               910-1086, gnl|Mm7|chr19 (10306716-10306895)
               

               
               910-1086, gnl|monDom2|scaffold_33 (28336355-28336540)
               

               
               910-1086, gnl|oryCun1|scaffold_186728 (14456-14642)
               

               
               910-1086, gnl|panTro1|chr9 (61750851-61751043)
               

               
               910-1086, gnl|rheMac2|chr14 (12782115-12781923)
               

               
               910-1086, gnl|rn3|chr1 (213276335-213276150)
               

               
               910-1086, gnl|tetNig1|chr5 (10649757-10649574)
               

               
               910-1086, gnl|xenTro1|scaffold_357 (140218-140392)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-697, gnl|bosTau2|chr29 (30882891-30882188)
               

               
               3-697, gnl|Hg17|chr11 (60834966-60834297)
               


               
               910-1086, gnl|bosTau2|chr29 (30877144-30876968)
               

               
               910-1086, gnl|canFam2|chr18 (58123297-58123111)
               

               
               910-1086, gnl|danRer3|chr11 (9091466-9091651)
               

               
               910-1086, gnl|echTel1|scaffold_300880 (644-464)
               

               
               910-1086, gnl|fr1|chrUn (5418153-5418338)
               

               
               910-1086, gnl|galGal2|chr5 (3085534-3085729)
               

               
               910-1086, gnl|hg17|chr11 (60827900-60828092)
               

               
               910-1086, gnl|Hg17|chr11 (60828084-60827900)
               

               
               910-1086, gnl|mm7|chr19 (10306899-10306710)
               

               
               910-1086, gnl|Mm7|chr19 (10306716-10306895)
               

               
               910-1086, gnl|monDom2|scaffold_33 (28336355-28336540)
               

               
               910-1086, gnl|oryCun1|scaffold_186728 (14456-14642)
               

               
               910-1086, gnl|panTro1|chr9 (61750851-61751043)
               

               
               910-1086, gnl|rheMac2|chr14 (12782115-12781923)
               

               
               910-1086, gnl|rn3|chr1 (213276335-213276150)
               

               
               910-1086, gnl|tetNig1|chr5 (10649757-10649574)
               

               
               910-1086, gnl|xenTro1|scaffold_357 (140218-140392)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)

	3-697, gnl\|bosTau2\|chr29 (30882891-30882188)
	3-697, gnl\|Hg17\|chr11 (60834966-60834297)

	910-1086, gnl\|bosTau2\|chr29 (30877144-30876968)
	910-1086, gnl\|canFam2\|chr18 (58123297-58123111)
	910-1086, gnl\|danRer3\|chr11 (9091466-9091651)
	910-1086, gnl\|echTel1\|scaffold_300880 (644-464)
	910-1086, gnl\|fr1\|chrUn (5418153-5418338)
	910-1086, gnl\|galGal2\|chr5 (3085534-3085729)
	910-1086, gnl\|hg17\|chr11 (60827900-60828092)
	910-1086, gnl\|Hg17\|chr11 (60828084-60827900)
	910-1086, gnl\|mm7\|chr19 (10306899-10306710)
	910-1086, gnl\|Mm7\|chr19 (10306716-10306895)
	910-1086, gnl\|monDom2\|scaffold_33 (28336355-28336540)
	910-1086, gnl\|oryCun1\|scaffold_186728 (14456-14642)
	910-1086, gnl\|panTro1\|chr9 (61750851-61751043)
	910-1086, gnl\|rheMac2\|chr14 (12782115-12781923)
	910-1086, gnl\|rn3\|chr1 (213276335-213276150)
	910-1086, gnl\|tetNig1\|chr5 (10649757-10649574)
	910-1086, gnl\|xenTro1\|scaffold_357 (140218-140392)