Ss1.1-rnje33c_g7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGTAGGGGTCGGGGCACGGGGCGGTGGGTTGGTTTGTAATAGTTGTGCGTTTGTACAG TCACTTTTCTCACTGTTAGCATTTTTGCCCACTACCATCCTTTTTTTTCCTTAATTTTGC TTCTGCATTTTTTTTTTCTCAGCAAACACGAATTCAGCCTTTCATTCCTGACATGTGAAA TTTCAGTTTCTCTGGGGTTTGTCAGATGGCGTGGAGACCACGCCTGAACTCAGGTTAAAG GGGGAAAAAAAACTTCCAATAAAAAGATGTAAATCTACTCTCTACCTCTGGCCGGGCCCA GCCTGCCGCCGCGCCCTGGCCGCCCTGGCCGCGGCCGGGCAGCCTGTGATGATTTATTTC AGTTTTTGCAGAACATTCAGGTATTAAAAGGGAGGGAAAAAAAAAAAAAAAAAAGACCAA AAAAAAAGGTAAAAAGAAAAAATAAGGTGTGATTTTAAATTTAAAAGAACACTGAAAGTT CATTTTATAACATTATTATGCAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGTAGGGGTCGGGGCACGGGGCGGTGGGTTGGTTTGTAATAGTTGTGCGTTTGTACAG TCACTTTTCTCACTGTTAGCATTTTTGCCCACTACCATCCTTTTTTTTCCTTAATTTTGC TTCTGCATTTTTTTTTTCTCAGCAAACACGAATTCAGCCTTTCATTCCTGACATGTGAAA TTTCAGTTTCTCTGGGGTTTGTCAGATGGCGTGGAGACCACGCCTGAACTCAGGTTAAAG GGGGAAAAAAAACTTCCAATAAAAAGATGTAAATCTACTCTCTACCTCTGGCCGGGCCCA GCCTGCCGCCGCGCCCTGGCCGCCCTGGCCGCGGCCGGGCAGCCTGTGATGATTTATTTC AGTTTTTGCAGAACATTCAGGTATTAAAAGGGAGGGAAAAAAAAAAAAAAAAAAGACCAA AAAAAAAGGTAAAAAGAAAAAATAAGGTGTGATTTTAAATTTAAAAGAACACTGAAAGTT CATTTTATAACATTATTATGCAGA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 301-399, - strand, RNAz p=0.838206 | |
| 308-414, - strand, RNAz p=0.789846 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 301-399, - strand, RNAz p=0.838206 | |
| 308-414, - strand, RNAz p=0.789846 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 1-414, gnl|bosTau2|chr7 (10260264-10260657) | |
| 1-414, gnl|canFam2|chr20 (60863683-60863077) | |
| 1-414, gnl|canFam2|chr20 (60863683-60863077) | |
| 1-414, gnl|canFam2|chr20 (60863077-60863683) | |
| 1-414, gnl|canFam2|chr20 (60863683-60863077) | |
| 1-414, gnl|canFam2|chr20 (60863077-60863682) | |
| 1-414, gnl|dasNov1|scaffold_6392 (10954-10334) | |
| 1-414, gnl|dasNov1|scaffold_6392 (10954-10334) | |
| 1-414, gnl|dasNov1|scaffold_6392 (10334-10980) | |
| 1-414, gnl|dasNov1|scaffold_6392 (10954-10334) | |
| 1-414, gnl|dasNov1|scaffold_6392 (10334-10947) | |
| 1-414, gnl|echTel1|scaffold_175820 (1456-841) | |
| 1-414, gnl|echTel1|scaffold_175820 (1456-841) | |
| 1-414, gnl|echTel1|scaffold_175820 (841-1478) | |
| 1-414, gnl|echTel1|scaffold_175820 (1456-841) | |
| 1-414, gnl|echTel1|scaffold_175820 (841-1456) | |
| 1-414, gnl|Hg17|chr19 (926350-926773) | |
| 1-414, gnl|hg17|chr9 (42126442-42127056) | |
| 1-414, gnl|hg17|chr9 (42933644-42934258) | |
| 1-414, gnl|hg17|chr9 (41594655-41595291) | |
| 1-414, gnl|hg17|chr9 (39869627-39870241) | |
| 1-414, gnl|hg17|chr9 (40589416-40590031) | |
| 1-414, gnl|loxAfr1|scaffold_87995 (1932-1355) | |
| 1-414, gnl|loxAfr1|scaffold_87995 (1932-1355) | |
| 1-414, gnl|loxAfr1|scaffold_87995 (1355-1937) | |
| 1-414, gnl|loxAfr1|scaffold_87995 (1932-1355) | |
| 1-414, gnl|loxAfr1|scaffold_87995 (1355-1932) | |
| 1-414, gnl|mm7|chr10 (79734269-79734943) | |
| 1-414, gnl|mm7|chr10 (79734269-79734943) | |
| 1-414, gnl|mm7|chr10 (79734943-79734247) | |
| 1-414, gnl|mm7|chr10 (79734269-79734943) | |
| 1-414, gnl|mm7|chr10 (79734943-79734269) | |
| 1-414, gnl|Mm7|chr10 (79734411-79734874) | |
| 1-414, gnl|monDom2|scaffold_75 (7392813-7392206) | |
| 1-414, gnl|monDom2|scaffold_75 (7392813-7392206) | |
| 1-414, gnl|monDom2|scaffold_75 (7392206-7392843) | |
| 1-414, gnl|monDom2|scaffold_75 (7392813-7392206) | |
| 1-414, gnl|monDom2|scaffold_75 (7392206-7392813) | |
| 1-414, gnl|oryCun1|scaffold_176637 (6608-6042) | |
| 1-414, gnl|oryCun1|scaffold_176637 (6608-6042) | |
| 1-414, gnl|oryCun1|scaffold_176637 (6042-6631) | |
| 1-414, gnl|oryCun1|scaffold_176637 (6608-6042) | |
| 1-414, gnl|oryCun1|scaffold_176637 (6042-6608) | |
| 1-414, gnl|panTro1|chr11_random (20819765-20820385) | |
| 1-414, gnl|panTro1|chr11_random (20819765-20820385) | |
| 1-414, gnl|panTro1|chr11_random (20820385-20819743) | |
| 1-414, gnl|panTro1|chr11_random (20819765-20820385) | |
| 1-414, gnl|panTro1|chr11_random (20820385-20819765) | |
| 1-414, gnl|rheMac2|chr15 (109654429-109653800) | |
| 1-414, gnl|rheMac2|chr15 (109654429-109653800) | |
| 1-414, gnl|rheMac2|chr15 (109653800-109654452) | |
| 1-414, gnl|rheMac2|chr15 (109654429-109653800) | |
| 1-414, gnl|rheMac2|chr15 (109653800-109654429) | |
| 1-414, gnl|rn3|chr7 (11267027-11266381) | |
| 1-414, gnl|rn3|chr7 (11267027-11266381) | |
| 1-414, gnl|rn3|chr7 (11266381-11267049) | |
| 1-414, gnl|rn3|chr7 (11267027-11266381) | |
| 1-414, gnl|rn3|chr7 (11266381-11267027) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-414, gnl|bosTau2|chr7 (10260264-10260657) | |
| 1-414, gnl|canFam2|chr20 (60863683-60863077) | |
| 1-414, gnl|canFam2|chr20 (60863683-60863077) | |
| 1-414, gnl|canFam2|chr20 (60863077-60863683) | |
| 1-414, gnl|canFam2|chr20 (60863683-60863077) | |
| 1-414, gnl|canFam2|chr20 (60863077-60863682) | |
| 1-414, gnl|dasNov1|scaffold_6392 (10954-10334) | |
| 1-414, gnl|dasNov1|scaffold_6392 (10954-10334) | |
| 1-414, gnl|dasNov1|scaffold_6392 (10334-10980) | |
| 1-414, gnl|dasNov1|scaffold_6392 (10954-10334) | |
| 1-414, gnl|dasNov1|scaffold_6392 (10334-10947) | |
| 1-414, gnl|echTel1|scaffold_175820 (1456-841) | |
| 1-414, gnl|echTel1|scaffold_175820 (1456-841) | |
| 1-414, gnl|echTel1|scaffold_175820 (841-1478) | |
| 1-414, gnl|echTel1|scaffold_175820 (1456-841) | |
| 1-414, gnl|echTel1|scaffold_175820 (841-1456) | |
| 1-414, gnl|Hg17|chr19 (926350-926773) | |
| 1-414, gnl|hg17|chr9 (42126442-42127056) | |
| 1-414, gnl|hg17|chr9 (42933644-42934258) | |
| 1-414, gnl|hg17|chr9 (41594655-41595291) | |
| 1-414, gnl|hg17|chr9 (39869627-39870241) | |
| 1-414, gnl|hg17|chr9 (40589416-40590031) | |
| 1-414, gnl|loxAfr1|scaffold_87995 (1932-1355) | |
| 1-414, gnl|loxAfr1|scaffold_87995 (1932-1355) | |
| 1-414, gnl|loxAfr1|scaffold_87995 (1355-1937) | |
| 1-414, gnl|loxAfr1|scaffold_87995 (1932-1355) | |
| 1-414, gnl|loxAfr1|scaffold_87995 (1355-1932) | |
| 1-414, gnl|mm7|chr10 (79734269-79734943) | |
| 1-414, gnl|mm7|chr10 (79734269-79734943) | |
| 1-414, gnl|mm7|chr10 (79734943-79734247) | |
| 1-414, gnl|mm7|chr10 (79734269-79734943) | |
| 1-414, gnl|mm7|chr10 (79734943-79734269) | |
| 1-414, gnl|Mm7|chr10 (79734411-79734874) | |
| 1-414, gnl|monDom2|scaffold_75 (7392813-7392206) | |
| 1-414, gnl|monDom2|scaffold_75 (7392813-7392206) | |
| 1-414, gnl|monDom2|scaffold_75 (7392206-7392843) | |
| 1-414, gnl|monDom2|scaffold_75 (7392813-7392206) | |
| 1-414, gnl|monDom2|scaffold_75 (7392206-7392813) | |
| 1-414, gnl|oryCun1|scaffold_176637 (6608-6042) | |
| 1-414, gnl|oryCun1|scaffold_176637 (6608-6042) | |
| 1-414, gnl|oryCun1|scaffold_176637 (6042-6631) | |
| 1-414, gnl|oryCun1|scaffold_176637 (6608-6042) | |
| 1-414, gnl|oryCun1|scaffold_176637 (6042-6608) | |
| 1-414, gnl|panTro1|chr11_random (20819765-20820385) | |
| 1-414, gnl|panTro1|chr11_random (20819765-20820385) | |
| 1-414, gnl|panTro1|chr11_random (20820385-20819743) | |
| 1-414, gnl|panTro1|chr11_random (20819765-20820385) | |
| 1-414, gnl|panTro1|chr11_random (20820385-20819765) | |
| 1-414, gnl|rheMac2|chr15 (109654429-109653800) | |
| 1-414, gnl|rheMac2|chr15 (109654429-109653800) | |
| 1-414, gnl|rheMac2|chr15 (109653800-109654452) | |
| 1-414, gnl|rheMac2|chr15 (109654429-109653800) | |
| 1-414, gnl|rheMac2|chr15 (109653800-109654429) | |
| 1-414, gnl|rn3|chr7 (11267027-11266381) | |
| 1-414, gnl|rn3|chr7 (11267027-11266381) | |
| 1-414, gnl|rn3|chr7 (11266381-11267049) | |
| 1-414, gnl|rn3|chr7 (11267027-11266381) | |
| 1-414, gnl|rn3|chr7 (11266381-11267027) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| amn (0.417711) | |
| cki (0.330469) | |
| cut (0.169924) | |
| nje (0.16592) | |
| eli (0.151814) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| cki (0.330469) | |
| cut (0.169924) | |
| nje (0.16592) | |
| eli (0.151814) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| eje (0.0988338) |