Ss1.1-rnje33c_i19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGGAGCTGGAGACAGTGATGATGGACTGGCTGGGGAAGATGCTGCAGCTGCCCGAGGC GTTTCTGGCTGGAGAGGCCGGAGAAGGCGGCGGGGTGATCCAGGGAAGTGCCAGTGAAGC TACCTTGGTGGCCCTGCTGGCTGCTCGGACCAAAGTGACGCGACGCCTGCAGGCCGCCTC CCCGGGGCTGACCCAAGGGGCCGTCTTGGAGAAGCTGGTGGCCTATGCATCCGACCAGGC ACACTCCTCGGTGGAAAGAGCCGGCTTGATTGGTGGCGTGAAATTAAAAGCAATCCCTTC GGATGGCAAGTTTGCCATGCGAGCTTCTGCCCTGCAGGAGGCCCTGGAGAGAGACAAGGC TGCCGGCCTGATTCCTTTCTTCGTGGTGGCTACGCTGGGGACCACATCGTGCTGCTCCTT TGACAATCTCTTAGAAGTGGGACCCATCTGTCACGAAGAGGACATATGGCTGCACGTGGA TGCTGCCTACGCAGGCAGTGCCTTCATCTGCCCTGAGTTCCGGCACCTGCTGAATGGAGT GGAGTTTGCAGATTCATTTAACTTTAATCCCCACAAATGGCTCTTGGTGAATTTTGACTG CTCGGCTATGTGGGTGAAAAGGAGAACGGACCTGACTGGAGCCTTCAAATTGGACCCCGT GTACTTAAAGCACAGCCACCAGGGCTCGGGGCTTATCACGGACTACAGGCACTGGCAGCT GCCACTGGGTCGGCGATTCCGGTCCCTGAAAATGTGGTTTGTTTTCAGGATGTACGGAGT CAAGGGACTGCAGGCCTATATCCGCAAGCACGTGCAGCTGTCTCATGAGTTTGAGGCATT TGTGCTTCAGGATCCCCGCTTTGAAGTCTGTGCCGAAGTCACCCTGGGGCTGGTGTGTTT CCGGCTGAAGGGCTCCGACGGACTGAATGAAGCGCTTCTGGAAAGGATAAACAGCGCCAG GAAAATCCACTTGGTTCCCTGTCGCCTGAGGGGCCAGTTCGTGCTGCGGTTCGCCATCTG CTCGCGCAAGGTGGAGTCGGGCCACGTGCGGCTGGCCTGGGAGCACATCCGAGGGCTGGC GGCCGAGCTGCTGGCCGCGGAGGAGGGAAAGGCAGAGATCAAAAGTTGAAGTGCCCTGAA GAGCAGAATCGGAGGAGACGCGTCGTCCCCGCTCCGAGGCGTAGAGCCTGCAATGGTCCC CCCAGTTCTTTAGCCCACGTTCTCCAGAAAGAAGCTTGTGCCTACGTCTGACCAGCCTCT CAGCAATGAAGAAGTATTATTTGCTCTTTGAAAAGTTAATCCCAGTGGAGACAGCTTTTA CTCTTTATTTGGCTGTGATTGTTTGTTGATTAAAACATCATAGGTTTCTGCATCCTTGAA GTTGTCAGCGGTGGTCCACTTTCCGGGGCAACCTATGCTGATGGGATTTGAGATGATACC CGTGGTCTTTAAATTACTCTGTCCTGTGGCTTAATGCTTAATAAATGATGTGAAGTGTAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGGAGCTGGAGACAGTGATGATGGACTGGCTGGGGAAGATGCTGCAGCTGCCCGAGGC GTTTCTGGCTGGAGAGGCCGGAGAAGGCGGCGGGGTGATCCAGGGAAGTGCCAGTGAAGC TACCTTGGTGGCCCTGCTGGCTGCTCGGACCAAAGTGACGCGACGCCTGCAGGCCGCCTC CCCGGGGCTGACCCAAGGGGCCGTCTTGGAGAAGCTGGTGGCCTATGCATCCGACCAGGC ACACTCCTCGGTGGAAAGAGCCGGCTTGATTGGTGGCGTGAAATTAAAAGCAATCCCTTC GGATGGCAAGTTTGCCATGCGAGCTTCTGCCCTGCAGGAGGCCCTGGAGAGAGACAAGGC TGCCGGCCTGATTCCTTTCTTCGTGGTGGCTACGCTGGGGACCACATCGTGCTGCTCCTT TGACAATCTCTTAGAAGTGGGACCCATCTGTCACGAAGAGGACATATGGCTGCACGTGGA TGCTGCCTACGCAGGCAGTGCCTTCATCTGCCCTGAGTTCCGGCACCTGCTGAATGGAGT GGAGTTTGCAGATTCATTTAACTTTAATCCCCACAAATGGCTCTTGGTGAATTTTGACTG CTCGGCTATGTGGGTGAAAAGGAGAACGGACCTGACTGGAGCCTTCAAATTGGACCCCGT GTACTTAAAGCACAGCCACCAGGGCTCGGGGCTTATCACGGACTACAGGCACTGGCAGCT GCCACTGGGTCGGCGATTCCGGTCCCTGAAAATGTGGTTTGTTTTCAGGATGTACGGAGT CAAGGGACTGCAGGCCTATATCCGCAAGCACGTGCAGCTGTCTCATGAGTTTGAGGCATT TGTGCTTCAGGATCCCCGCTTTGAAGTCTGTGCCGAAGTCACCCTGGGGCTGGTGTGTTT CCGGCTGAAGGGCTCCGACGGACTGAATGAAGCGCTTCTGGAAAGGATAAACAGCGCCAG GAAAATCCACTTGGTTCCCTGTCGCCTGAGGGGCCAGTTCGTGCTGCGGTTCGCCATCTG CTCGCGCAAGGTGGAGTCGGGCCACGTGCGGCTGGCCTGGGAGCACATCCGAGGGCTGGC GGCCGAGCTGCTGGCCGCGGAGGAGGGAAAGGCAGAGATCAAAAGTTGAAGTGCCCTGAA GAGCAGAATCGGAGGAGACGCGTCGTCCCCGCTCCGAGGCGTAGAGCCTGCAATGGTCCC CCCAGTTCTTTAGCCCACGTTCTCCAGAAAGAAGCTTGTGCCTACGTCTGACCAGCCTCT CAGCAATGAAGAAGTATTATTTGCTCTTTGAAAAGTTAATCCCAGTGGAGACAGCTTTTA CTCTTTATTTGGCTGTGATTGTTTGTTGATTAAAACATCATAGGTTTCTGCATCCTTGAA GTTGTCAGCGGTGGTCCACTTTCCGGGGCAACCTATGCTGATGGGATTTGAGATGATACC CGTGGTCTTTAAATTACTCTGTCCTGTGGCTTAATGCTTAATAAATGATGTGAAGTGTAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 1-108, gnl|bosTau2|chr4 (201187-201080) | |
| 1-108, gnl|canFam2|chr18 (4841389-4841517) | |
| 1-108, gnl|danRer3|chr5 (42785936-42786062) | |
| 1-108, gnl|dasNov1|scaffold_20476 (15340-15468) | |
| 1-108, gnl|echTel1|scaffold_164109 (3932-3804) | |
| 1-108, gnl|fr1|chrUn (27398412-27398287) | |
| 1-108, gnl|galGal2|chr2 (80766305-80766433) | |
| 1-108, gnl|hg17|chr7 (50379763-50379891) | |
| 1-108, gnl|Hg17|chr7 (50379869-50379762) | |
| 1-108, gnl|loxAfr1|scaffold_1928 (35814-35938) | |
| 1-108, gnl|mm7|chr11 (11825138-11825266) | |
| 1-108, gnl|Mm7|chr11 (11825244-11825137) | |
| 1-108, gnl|monDom2|scaffold_5 (61226122-61225994) | |
| 1-108, gnl|oryCun1|scaffold_173057 (22664-22792) | |
| 1-108, gnl|panTro1|chr6 (52017821-52017949) | |
| 1-108, gnl|rheMac2|chr3 (75813242-75813114) | |
| 1-108, gnl|rn3|chr14 (92782204-92782332) | |
| 1-108, gnl|xenTro1|scaffold_26 (2673323-2673451) | |
| 236-384, gnl|bosTau2|chr4 (187553-187405) | |
| 236-384, gnl|canFam2|chr18 (4834065-4834242) | |
| 236-384, gnl|danRer3|chr5 (42777288-42777465) | |
| 236-384, gnl|dasNov1|scaffold_20476 (5881-6080) | |
| 236-384, gnl|echTel1|scaffold_315890 (41656-41859) | |
| 236-384, gnl|fr1|chrUn (27400754-27400587) | |
| 236-384, gnl|hg17|chr7 (50370014-50370216) | |
| 236-384, gnl|Hg17|chr7 (50370190-50370042) | |
| 236-384, gnl|mm7|chr11 (11815652-11815812) | |
| 236-384, gnl|Mm7|chr11 (11815805-11815657) | |
| 236-384, gnl|monDom2|scaffold_5 (61240838-61240660) | |
| 236-384, gnl|oryCun1|scaffold_173057 (15988-16166) | |
| 236-384, gnl|panTro1|chr6 (52008055-52008257) | |
| 236-384, gnl|rheMac2|chr3 (75823036-75822834) | |
| 236-384, gnl|rn3|chr14 (92773372-92773534) | |
| 458-607, gnl|bosTau2|chr10 (41932313-41932463) | |
| 458-607, gnl|Hg17|chr15 (48332255-48332105) | |
| 458-607, gnl|Mm7|chr2 (126342794-126342644) | |
| 670-808, gnl|bosTau2|chr4 (137788-137649) | |
| 670-808, gnl|canFam2|chr18 (4795847-4796016) | |
| 670-808, gnl|danRer3|chr5 (42759183-42759340) | |
| 670-808, gnl|dasNov1|scaffold_15005 (24692-24525) | |
| 670-808, gnl|echTel1|scaffold_211785 (12858-12701) | |
| 670-808, gnl|fr1|chrUn (27403837-27403707) | |
| 670-808, gnl|hg17|chr7 (50311956-50312125) | |
| 670-808, gnl|Hg17|chr7 (50312119-50311980) | |
| 670-808, gnl|loxAfr1|scaffold_27254 (21307-21477) | |
| 670-808, gnl|mm7|chr11 (11774181-11774347) | |
| 670-808, gnl|Mm7|chr11 (11774341-11774203) | |
| 670-808, gnl|monDom2|scaffold_5 (61284808-61284631) | |
| 670-808, gnl|oryCun1|scaffold_93055 (9966-10112) | |
| 670-808, gnl|panTro1|chr6 (51949860-51950029) | |
| 670-808, gnl|rheMac2|chr3 (75883726-75883557) | |
| 670-808, gnl|rn3|chr14 (92725872-92726038) | |
| 670-808, gnl|xenTro1|scaffold_26 (2650911-2651064) | |
| 905-1115, gnl|bosTau2|chr4 (130319-130106) | |
| 905-1115, gnl|Hg17|chr7 (50305346-50305120) | |
| 905-1115, gnl|Mm7|chr11 (11767443-11767219) | |
| 1207-1498, gnl|bosTau2|chr4 (126913-126621) | |
| 1207-1498, gnl|Hg17|chr7 (50300651-50300351) | |
| 1207-1498, gnl|Mm7|chr11 (11766419-11766117) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-108, gnl|bosTau2|chr4 (201187-201080) | |
| 1-108, gnl|canFam2|chr18 (4841389-4841517) | |
| 1-108, gnl|danRer3|chr5 (42785936-42786062) | |
| 1-108, gnl|dasNov1|scaffold_20476 (15340-15468) | |
| 1-108, gnl|echTel1|scaffold_164109 (3932-3804) | |
| 1-108, gnl|fr1|chrUn (27398412-27398287) | |
| 1-108, gnl|galGal2|chr2 (80766305-80766433) | |
| 1-108, gnl|hg17|chr7 (50379763-50379891) | |
| 1-108, gnl|Hg17|chr7 (50379869-50379762) | |
| 1-108, gnl|loxAfr1|scaffold_1928 (35814-35938) | |
| 1-108, gnl|mm7|chr11 (11825138-11825266) | |
| 1-108, gnl|Mm7|chr11 (11825244-11825137) | |
| 1-108, gnl|monDom2|scaffold_5 (61226122-61225994) | |
| 1-108, gnl|oryCun1|scaffold_173057 (22664-22792) | |
| 1-108, gnl|panTro1|chr6 (52017821-52017949) | |
| 1-108, gnl|rheMac2|chr3 (75813242-75813114) | |
| 1-108, gnl|rn3|chr14 (92782204-92782332) | |
| 1-108, gnl|xenTro1|scaffold_26 (2673323-2673451) | |
| 236-384, gnl|bosTau2|chr4 (187553-187405) | |
| 236-384, gnl|canFam2|chr18 (4834065-4834242) | |
| 236-384, gnl|danRer3|chr5 (42777288-42777465) | |
| 236-384, gnl|dasNov1|scaffold_20476 (5881-6080) | |
| 236-384, gnl|echTel1|scaffold_315890 (41656-41859) | |
| 236-384, gnl|fr1|chrUn (27400754-27400587) | |
| 236-384, gnl|hg17|chr7 (50370014-50370216) | |
| 236-384, gnl|Hg17|chr7 (50370190-50370042) | |
| 236-384, gnl|mm7|chr11 (11815652-11815812) | |
| 236-384, gnl|Mm7|chr11 (11815805-11815657) | |
| 236-384, gnl|monDom2|scaffold_5 (61240838-61240660) | |
| 236-384, gnl|oryCun1|scaffold_173057 (15988-16166) | |
| 236-384, gnl|panTro1|chr6 (52008055-52008257) | |
| 236-384, gnl|rheMac2|chr3 (75823036-75822834) | |
| 236-384, gnl|rn3|chr14 (92773372-92773534) | |
| 458-607, gnl|bosTau2|chr10 (41932313-41932463) | |
| 458-607, gnl|Hg17|chr15 (48332255-48332105) | |
| 458-607, gnl|Mm7|chr2 (126342794-126342644) | |
| 670-808, gnl|bosTau2|chr4 (137788-137649) | |
| 670-808, gnl|canFam2|chr18 (4795847-4796016) | |
| 670-808, gnl|danRer3|chr5 (42759183-42759340) | |
| 670-808, gnl|dasNov1|scaffold_15005 (24692-24525) | |
| 670-808, gnl|echTel1|scaffold_211785 (12858-12701) | |
| 670-808, gnl|fr1|chrUn (27403837-27403707) | |
| 670-808, gnl|hg17|chr7 (50311956-50312125) | |
| 670-808, gnl|Hg17|chr7 (50312119-50311980) | |
| 670-808, gnl|loxAfr1|scaffold_27254 (21307-21477) | |
| 670-808, gnl|mm7|chr11 (11774181-11774347) | |
| 670-808, gnl|Mm7|chr11 (11774341-11774203) | |
| 670-808, gnl|monDom2|scaffold_5 (61284808-61284631) | |
| 670-808, gnl|oryCun1|scaffold_93055 (9966-10112) | |
| 670-808, gnl|panTro1|chr6 (51949860-51950029) | |
| 670-808, gnl|rheMac2|chr3 (75883726-75883557) | |
| 670-808, gnl|rn3|chr14 (92725872-92726038) | |
| 670-808, gnl|xenTro1|scaffold_26 (2650911-2651064) | |
| 905-1115, gnl|bosTau2|chr4 (130319-130106) | |
| 905-1115, gnl|Hg17|chr7 (50305346-50305120) | |
| 905-1115, gnl|Mm7|chr11 (11767443-11767219) | |
| 1207-1498, gnl|bosTau2|chr4 (126913-126621) | |
| 1207-1498, gnl|Hg17|chr7 (50300651-50300351) | |
| 1207-1498, gnl|Mm7|chr11 (11766419-11766117) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cje (0.660939) | |
| sin (0.524843) | |
| nje (0.49776) | |
| cki (0.495704) | |
| jej (0.494609) | |
| kid (0.389206) | |
| fty (0.351679) | |
| eje (0.197668) | |
| nco (0.161734) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| sug (0.127291) | |
| pgl (0.118483) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.660939) | |
| sin (0.524843) | |
| nje (0.49776) | |
| cki (0.495704) | |
| jej (0.494609) | |
| kid (0.389206) | |
| fty (0.351679) | |
| eje (0.197668) | |
| nco (0.161734) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| sug (0.127291) | |
| pgl (0.118483) |