Non-Coding RNA Search

Ss1.1-rnje33c_m23.5

Sequence:


               
               GCAGGTTAAGCCTTACAGTTCTGTGGAGAAGGACCAGCATCGTATCACTCTGGACCTCAT
ATCTGAAGCCAATCACTTTCCTAAAGAAACTCTTGAATTTTGGTTGAAACACGTGGAAGA
TGAATCTGCTGTGTTGCAAAGGCCAAAGTCAGATAAGTTGTGGAGTATAATTATACTGGA
TGTCATTGAACCATCTGGGCTTATTCAGCAGGAAATAATGGAAAAAGCTGCAATATCCAG
ATGTTTGCTACAGTCCGGAGGGAAGATCTTTCCTCAGTACGTGCTGATGTTTGGGTTGCT
CGTGGAATCACAGACACTGGTGGAAGAAAGCGCTGTGCAAGGAGCAGAACGAACTCTTGG
ATTCAATATAGCACCTTTTATTAACCAGTTTCAGGTACCCATACGTGTATTTTTGGACCT
CTCTTCCTTGCCCTGTATACCTTTAAGCCAACCTGTGGAACTCTTAAGACTAGACTTAAT
GACACCGTATTTGAACACCTCTAACAGAGAAGTAAAGGTCCGCATTTGTAAATCTGGACA
AGTGACTGCCATCCCATTTTGGTATCATATGTACCTTGATGATGAGATTATGTTGGACAC
CTCGAGTGAAGCCTCCCACTGGAAACAAGCTGCAGTCGTTTTAGATCATCCCTTCCGGGT
GGAAATGGGGGATGAACTTGTTCTCCATGTCCAGCACCACAAAAGCAATGTCAGCATCAC
GGTAAAGCAGTGAAGAGCAGTTTTCCTGTGCAAAATGTGGAAGTAGAGCAGCAAGTACAC
AATTCTTCTAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGTTAAGCCTTACAGTTCTGTGGAGAAGGACCAGCATCGTATCACTCTGGACCTCAT
ATCTGAAGCCAATCACTTTCCTAAAGAAACTCTTGAATTTTGGTTGAAACACGTGGAAGA
TGAATCTGCTGTGTTGCAAAGGCCAAAGTCAGATAAGTTGTGGAGTATAATTATACTGGA
TGTCATTGAACCATCTGGGCTTATTCAGCAGGAAATAATGGAAAAAGCTGCAATATCCAG
ATGTTTGCTACAGTCCGGAGGGAAGATCTTTCCTCAGTACGTGCTGATGTTTGGGTTGCT
CGTGGAATCACAGACACTGGTGGAAGAAAGCGCTGTGCAAGGAGCAGAACGAACTCTTGG
ATTCAATATAGCACCTTTTATTAACCAGTTTCAGGTACCCATACGTGTATTTTTGGACCT
CTCTTCCTTGCCCTGTATACCTTTAAGCCAACCTGTGGAACTCTTAAGACTAGACTTAAT
GACACCGTATTTGAACACCTCTAACAGAGAAGTAAAGGTCCGCATTTGTAAATCTGGACA
AGTGACTGCCATCCCATTTTGGTATCATATGTACCTTGATGATGAGATTATGTTGGACAC
CTCGAGTGAAGCCTCCCACTGGAAACAAGCTGCAGTCGTTTTAGATCATCCCTTCCGGGT
GGAAATGGGGGATGAACTTGTTCTCCATGTCCAGCACCACAAAAGCAATGTCAGCATCAC
GGTAAAGCAGTGAAGAGCAGTTTTCCTGTGCAAAATGTGGAAGTAGAGCAGCAAGTACAC
AATTCTTCTAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61818407|ref|XP_581171.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61818407|ref|XP_581171.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-240, gnl|bosTau2|chr17 (5571312-5571073)
               

               
               1-240, gnl|Hg17|chr4 (148932847-148932608)
               

               
               1-240, gnl|Mm7|chr8 (76116130-76116369)
               


               
               516-786, gnl|bosTau2|chr17 (5560204-5559933)
               

               
               516-786, gnl|Hg17|chr4 (148917505-148917232)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-240, gnl|bosTau2|chr17 (5571312-5571073)
               

               
               1-240, gnl|Hg17|chr4 (148932847-148932608)
               

               
               1-240, gnl|Mm7|chr8 (76116130-76116369)
               


               
               516-786, gnl|bosTau2|chr17 (5560204-5559933)
               

               
               516-786, gnl|Hg17|chr4 (148917505-148917232)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbe (0.239234)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)

	1-240, gnl\|bosTau2\|chr17 (5571312-5571073)
	1-240, gnl\|Hg17\|chr4 (148932847-148932608)
	1-240, gnl\|Mm7\|chr8 (76116130-76116369)

	516-786, gnl\|bosTau2\|chr17 (5560204-5559933)
	516-786, gnl\|Hg17\|chr4 (148917505-148917232)

	cbe (0.239234)
	nje (0.16592)
	nco (0.161734)
	lnt (0.142308)
	sug (0.127291)