Non-Coding RNA Search

Ss1.1-rnlu1804b_e15.5

Sequence:


               
               TTCGGCAGTTCAGAGATCTATAACATAGTGGAAGCCTTCGAGGAGGTGATGGACAGCCTC
TGTGTCCCCCAGTTCAATAAGGACGGGGAGGAAAGAGTGATCCTTTTCCTGAAGATGGCT
TCCGGCCACACCTTCCAGCCTGACCTGGTCAAGAGCATCCGCAACGCCATCCGCCTTGGC
CTGTCCGCTCGGCACGTGCCCAGCCTCATCCTGGAGACCAAGGACATCCCGTACACCCTC
AACGGCAAGAAGGTGGAAGTGGCCGTGAAGCAGATCATCGCCGGGAAAGCCGTGGAGCAC
CGGGGGGCCTTCTCAAACCCCGAGACCCTGGATCTGTACCGGGACATCCCGGAGCTGCAG
GACTTCTGAGCTGGGCTGGCTGGCACATCCCTCAGCTACATGCGTCTGTAGTGTCACTTT
TGTACGCTCAGGAAATTACTTAGACACCTAAGGCCCTTCAGGGTTTGTGGCGAGGGTCCT
GAGGCCTGGGGAAGGACCATGCTTTGTTCTGCAGCTCTGTCTGCCGGGCCCCAATGTCCC
CCCCCCCACCCCCCCACCCCCGCCCCGCACCCCTGCTGCCACCCACCAAGGATCCAACAG
GGAGGGTTTGGGTTGTATGCGTGGGGCCTGAGTGTGTGTCTCTGCACACTTGCAGGAAAG
AGCTGTGTGTGTGCACCGTCACGGCCAATGCCCGGGTCTGCCCAGAGCTGGTGGGCGTCC
TGGTGATGGGGCACCCCTGTGTCACTTCGTACGGTGGCTCCATTTCACTCTCTTAAGGCC
CAGATCTCTTTCTTCCCTTTATGTTGGACCCCAAGCTCTGGCCGTGGTCCTTCAGGGCCC
GTCCATCTGCTGTGGCACGTTACCTGCCCCGGGGCCTAGGGTGACTTTACAACATCCCAC
AGCTGACTGTCAGGGCCATGGGCTGGCTGCTCTCCCACTGTGTGTCACCGACGGAATCTG
GGTAGTTCTTCAGGGAACCACGTGTCACATTCCAACCAGAGGGCGTGTCCCAGCACAGTT
CCGGTTCTCTTTGGAGAACGAGTGGGTTTCACATCTTAACAGGATCTCTTTATTTCATGG
ACTTTGAGTGGTTTTAAATTTTGTTATTATTAGTTAAGTGTGTGGTGCGTGGGCATTTGG
AGGCATGGGTGATCCCTGGGTCCCACTGAACCGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGGCAGTTCAGAGATCTATAACATAGTGGAAGCCTTCGAGGAGGTGATGGACAGCCTC
TGTGTCCCCCAGTTCAATAAGGACGGGGAGGAAAGAGTGATCCTTTTCCTGAAGATGGCT
TCCGGCCACACCTTCCAGCCTGACCTGGTCAAGAGCATCCGCAACGCCATCCGCCTTGGC
CTGTCCGCTCGGCACGTGCCCAGCCTCATCCTGGAGACCAAGGACATCCCGTACACCCTC
AACGGCAAGAAGGTGGAAGTGGCCGTGAAGCAGATCATCGCCGGGAAAGCCGTGGAGCAC
CGGGGGGCCTTCTCAAACCCCGAGACCCTGGATCTGTACCGGGACATCCCGGAGCTGCAG
GACTTCTGAGCTGGGCTGGCTGGCACATCCCTCAGCTACATGCGTCTGTAGTGTCACTTT
TGTACGCTCAGGAAATTACTTAGACACCTAAGGCCCTTCAGGGTTTGTGGCGAGGGTCCT
GAGGCCTGGGGAAGGACCATGCTTTGTTCTGCAGCTCTGTCTGCCGGGCCCCAATGTCCC
CCCCCCCACCCCCCCACCCCCGCCCCGCACCCCTGCTGCCACCCACCAAGGATCCAACAG
GGAGGGTTTGGGTTGTATGCGTGGGGCCTGAGTGTGTGTCTCTGCACACTTGCAGGAAAG
AGCTGTGTGTGTGCACCGTCACGGCCAATGCCCGGGTCTGCCCAGAGCTGGTGGGCGTCC
TGGTGATGGGGCACCCCTGTGTCACTTCGTACGGTGGCTCCATTTCACTCTCTTAAGGCC
CAGATCTCTTTCTTCCCTTTATGTTGGACCCCAAGCTCTGGCCGTGGTCCTTCAGGGCCC
GTCCATCTGCTGTGGCACGTTACCTGCCCCGGGGCCTAGGGTGACTTTACAACATCCCAC
AGCTGACTGTCAGGGCCATGGGCTGGCTGCTCTCCCACTGTGTGTCACCGACGGAATCTG
GGTAGTTCTTCAGGGAACCACGTGTCACATTCCAACCAGAGGGCGTGTCCCAGCACAGTT
CCGGTTCTCTTTGGAGAACGAGTGGGTTTCACATCTTAACAGGATCTCTTTATTTCATGG
ACTTTGAGTGGTTTTAAATTTTGTTATTATTAGTTAAGTGTGTGGTGCGTGGGCATTTGG
AGGCATGGGTGATCCCTGGGTCCCACTGAACCGAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|10437133|dbj|BAB14991.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10437133|dbj|BAB14991.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               24-230, gnl|bosTau2|chr17 (25983685-25983891)
               

               
               24-230, gnl|Hg17|chr12 (124146083-124146288)
               

               
               24-230, gnl|Mm7|chr5 (124754420-124754626)
               


               
               231-545, gnl|bosTau2|chr17 (25988388-25988705)
               

               
               231-545, gnl|Hg17|chr12 (124151517-124151835)
               

               
               231-545, gnl|Mm7|chr5 (124755712-124756004)
               


               
               632-1153, gnl|bosTau2|chr17 (25988743-25989274)
               

               
               632-1153, gnl|Hg17|chr12 (124151870-124152368)
               

               
               632-1153, gnl|Mm7|chr5 (124756041-124756536)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-230, gnl|bosTau2|chr17 (25983685-25983891)
               

               
               24-230, gnl|Hg17|chr12 (124146083-124146288)
               

               
               24-230, gnl|Mm7|chr5 (124754420-124754626)
               


               
               231-545, gnl|bosTau2|chr17 (25988388-25988705)
               

               
               231-545, gnl|Hg17|chr12 (124151517-124151835)
               

               
               231-545, gnl|Mm7|chr5 (124755712-124756004)
               


               
               632-1153, gnl|bosTau2|chr17 (25988743-25989274)
               

               
               632-1153, gnl|Hg17|chr12 (124151870-124152368)
               

               
               632-1153, gnl|Mm7|chr5 (124756041-124756536)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               sme (0.305437)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)

	24-230, gnl\|bosTau2\|chr17 (25983685-25983891)
	24-230, gnl\|Hg17\|chr12 (124146083-124146288)
	24-230, gnl\|Mm7\|chr5 (124754420-124754626)

	231-545, gnl\|bosTau2\|chr17 (25988388-25988705)
	231-545, gnl\|Hg17\|chr12 (124151517-124151835)
	231-545, gnl\|Mm7\|chr5 (124755712-124756004)

	632-1153, gnl\|bosTau2\|chr17 (25988743-25989274)
	632-1153, gnl\|Hg17\|chr12 (124151870-124152368)
	632-1153, gnl\|Mm7\|chr5 (124756041-124756536)

	sme (0.305437)
	fli (0.202881)
	col (0.195008)
	nlu (0.191681)
	nmm (0.132802)
	pgl (0.118483)
	jca (0.11396)