Non-Coding RNA Search

Ss1.1-rnlu1804b_f17.5

Sequence:


               
               CTGCCAGTACACATGACGATAAAAGTTTGGATGAAGCTATAGACATGAGATTCGACTGTT
AAATCAGTGGGTCTTTAAACCTACCCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCT
ATGGTTTTGTTGGTTTAACTTGCCGGAGCTCCTGCATATAGATCACTTGTATCAAGTGTT
TTCATTGCTAAGTTATATGTGTTAGTGTCGGGGAAATAGTTTGCAGATAATGGAGGAGTA
ACCCTACAACTATATGTCCTTAGTTCTTACAGAACCTCATAGTTTGAGAACAAATGCTGA
TGCAACTGATTTATACAAAATGAACTTTGGCAAGGAAAATAACATTTACCTCATTGTTTA
TGGTCATGCTTTGTGCATAATCAAAGTTTATGATTAAATGTAAGGAAGTGGTATCTAGTC
AGTCCATAAAGATTGTGCTCATATTTTGTGGAAGAGTAGCCATTAGTTTGTTCAGGAGAC
ACAGTGCTTCCTTCAGATGCCATTGATGTTTCTCCTGTTGAAAAGCTGATGTGTCCAGCT
CAACCTTTATGCTGACATAATACCATTTCTGATCATGAAAATTGGCTACTGGTGTATGTA
GCAGTTCTTAAATCAGCAGTATTATGAAAGAAAATTTGCCCCTCATTAGAATGTTGAAGA
AATCTTTTAAAAGTGAACTGAAAATTTGTCAGATTGCAGATGTTCAGGTGTTTATGCCAC
AAAACTCTGAGTTGATCCCCATTTTCAGTTGTCTGACTCATTTCTAGGGAAAAAGAACTC
TTAAATCCTTTCTTCACTTTGAGCAATGTTCTAATTAGATAAATGAAGTGGAGAAGAGCA
GTTAAATTCTGAAGGTAATTGAATTTGTACTATAGTATGTGACAGAATTTTAAAAAAAAT
TATTAAAATATTTTATTTAGAAATTGGGATTTATTTAATTTTGAAATAATGCTCCAGAAC
TTAACCAGATTTATGCATTATACCTATTGCCACTGACCACTTCAAAATGATTTTTTTGTT
TCCTCTAATAGTTTGCCACAGACTTTATTTTGAATATGCTTTTTTTTTTTTCTTTCTTTT
TTCTTTTTTAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCAGTACACATGACGATAAAAGTTTGGATGAAGCTATAGACATGAGATTCGACTGTT
AAATCAGTGGGTCTTTAAACCTACCCCTGGTAGGGAAATAGCTACAGTTTTACGGCAGCT
ATGGTTTTGTTGGTTTAACTTGCCGGAGCTCCTGCATATAGATCACTTGTATCAAGTGTT
TTCATTGCTAAGTTATATGTGTTAGTGTCGGGGAAATAGTTTGCAGATAATGGAGGAGTA
ACCCTACAACTATATGTCCTTAGTTCTTACAGAACCTCATAGTTTGAGAACAAATGCTGA
TGCAACTGATTTATACAAAATGAACTTTGGCAAGGAAAATAACATTTACCTCATTGTTTA
TGGTCATGCTTTGTGCATAATCAAAGTTTATGATTAAATGTAAGGAAGTGGTATCTAGTC
AGTCCATAAAGATTGTGCTCATATTTTGTGGAAGAGTAGCCATTAGTTTGTTCAGGAGAC
ACAGTGCTTCCTTCAGATGCCATTGATGTTTCTCCTGTTGAAAAGCTGATGTGTCCAGCT
CAACCTTTATGCTGACATAATACCATTTCTGATCATGAAAATTGGCTACTGGTGTATGTA
GCAGTTCTTAAATCAGCAGTATTATGAAAGAAAATTTGCCCCTCATTAGAATGTTGAAGA
AATCTTTTAAAAGTGAACTGAAAATTTGTCAGATTGCAGATGTTCAGGTGTTTATGCCAC
AAAACTCTGAGTTGATCCCCATTTTCAGTTGTCTGACTCATTTCTAGGGAAAAAGAACTC
TTAAATCCTTTCTTCACTTTGAGCAATGTTCTAATTAGATAAATGAAGTGGAGAAGAGCA
GTTAAATTCTGAAGGTAATTGAATTTGTACTATAGTATGTGACAGAATTTTAAAAAAAAT
TATTAAAATATTTTATTTAGAAATTGGGATTTATTTAATTTTGAAATAATGCTCCAGAAC
TTAACCAGATTTATGCATTATACCTATTGCCACTGACCACTTCAAAATGATTTTTTTGTT
TCCTCTAATAGTTTGCCACAGACTTTATTTTGAATATGCTTTTTTTTTTTTCTTTCTTTT
TTCTTTTTTAGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-198, - strand, RNAz p=0.95718
               

               
               438-666, + strand, RNAz p=0.962499

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-198, - strand, RNAz p=0.95718
               

               
               438-666, + strand, RNAz p=0.962499

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK001408, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK001408, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1092, gnl|bosTau2|chr1 (85983914-85985018)
               

               
               1-1092, gnl|Hg17|chr3 (137352748-137351725)
               

               
               1-1092, gnl|Mm7|chr9 (100792006-100793094)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1092, gnl|bosTau2|chr1 (85983914-85985018)
               

               
               1-1092, gnl|Hg17|chr3 (137352748-137351725)
               

               
               1-1092, gnl|Mm7|chr9 (100792006-100793094)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cty (0.10408)

	1-198, - strand, RNAz p=0.95718
	438-666, + strand, RNAz p=0.962499

	1-1092, gnl\|bosTau2\|chr1 (85983914-85985018)
	1-1092, gnl\|Hg17\|chr3 (137352748-137351725)
	1-1092, gnl\|Mm7\|chr9 (100792006-100793094)