Non-Coding RNA Search

Ss1.1-rnlu1807b_k13.5

Sequence:


               
               CGGCTCCGCATCCCCTGCTGTCCTGTGAACCTCAAACGCCTTCTTGTCGTGGTCGTGGTG
GTGGTTCTTGTCGTCGTGGTGATTGTAGGGGCCCTGCTCATGGGTCTTCACATGAGCCAG
AAACATACTGAGATGCTCCTGATTGCCTACAAGCCAGCCCCGGGAACCTGCTGCTATGTC
ATGAAGATGTCTCCGCAGAGTATGCCGAGTCTTGAGGCTCTCACCAAAAAATTCCAGAAC
TTCCAGGTGAGTGTGCAGGCCAAGCCCTCGACGCCTACCTCTAAGCTGGGCCAGGAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTCCGCATCCCCTGCTGTCCTGTGAACCTCAAACGCCTTCTTGTCGTGGTCGTGGTG
GTGGTTCTTGTCGTCGTGGTGATTGTAGGGGCCCTGCTCATGGGTCTTCACATGAGCCAG
AAACATACTGAGATGCTCCTGATTGCCTACAAGCCAGCCCCGGGAACCTGCTGCTATGTC
ATGAAGATGTCTCCGCAGAGTATGCCGAGTCTTGAGGCTCTCACCAAAAAATTCCAGAAC
TTCCAGGTGAGTGTGCAGGCCAAGCCCTCGACGCCTACCTCTAAGCTGGGCCAGGAGGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               PSPC_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               PSPC_PIG

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-135, gnl|bosTau2|chr8 (31420424-31420290)
               

               
               1-135, gnl|canFam2|chr25 (38079413-38078942)
               

               
               1-135, gnl|hg17|chr8 (22075997-22076463)
               

               
               1-135, gnl|Hg17|chr8 (22076056-22076190)
               

               
               1-135, gnl|loxAfr1|scaffold_16625 (6116-5680)
               

               
               1-135, gnl|mm7|chr14 (65167294-65166840)
               

               
               1-135, gnl|Mm7|chr14 (65167233-65167099)
               

               
               1-135, gnl|monDom2|scaffold_1 (73417385-73416944)
               

               
               1-135, gnl|oryCun1|scaffold_171762 (5634-5235)
               

               
               1-135, gnl|panTro1|chr7 (23008627-23009093)
               

               
               1-135, gnl|rheMac2|chr8 (22085868-22086334)
               

               
               1-135, gnl|rn3|chr15 (50940681-50940311)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-135, gnl|bosTau2|chr8 (31420424-31420290)
               

               
               1-135, gnl|canFam2|chr25 (38079413-38078942)
               

               
               1-135, gnl|hg17|chr8 (22075997-22076463)
               

               
               1-135, gnl|Hg17|chr8 (22076056-22076190)
               

               
               1-135, gnl|loxAfr1|scaffold_16625 (6116-5680)
               

               
               1-135, gnl|mm7|chr14 (65167294-65166840)
               

               
               1-135, gnl|Mm7|chr14 (65167233-65167099)
               

               
               1-135, gnl|monDom2|scaffold_1 (73417385-73416944)
               

               
               1-135, gnl|oryCun1|scaffold_171762 (5634-5235)
               

               
               1-135, gnl|panTro1|chr7 (23008627-23009093)
               

               
               1-135, gnl|rheMac2|chr8 (22085868-22086334)
               

               
               1-135, gnl|rn3|chr15 (50940681-50940311)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.766724)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.766724)

	1-135, gnl\|bosTau2\|chr8 (31420424-31420290)
	1-135, gnl\|canFam2\|chr25 (38079413-38078942)
	1-135, gnl\|hg17\|chr8 (22075997-22076463)
	1-135, gnl\|Hg17\|chr8 (22076056-22076190)
	1-135, gnl\|loxAfr1\|scaffold_16625 (6116-5680)
	1-135, gnl\|mm7\|chr14 (65167294-65166840)
	1-135, gnl\|Mm7\|chr14 (65167233-65167099)
	1-135, gnl\|monDom2\|scaffold_1 (73417385-73416944)
	1-135, gnl\|oryCun1\|scaffold_171762 (5634-5235)
	1-135, gnl\|panTro1\|chr7 (23008627-23009093)
	1-135, gnl\|rheMac2\|chr8 (22085868-22086334)
	1-135, gnl\|rn3\|chr15 (50940681-50940311)