Ss1.1-rnlu1807b_m24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGTGGCCGGAAACCCCCCAGTCGCCCCAGCAGCTCTGCTTCCAAGAAACAGTACGTGTA AGGGCCTGGGGTTATGTCACCCCGCGGTGGGCCCGGGGACGTCTTGCTGCCTTTGATGTC CCCTCCTTGAAGGCTCTGCAGAGGTGAACTGGGGCTAGGGGAAGCAGCTGCGTACTGGGC ATAGGGCCTCGCTGCATGTTGTTCCTGAACACCTGGGGTCTTCCAGGTGACCAGAGAGCA CCACAGCTTCCCCTCCAGAACGCGGCCTGCCCCGGGCACAGACAGAGCCAGCGTGGGGTG CTCTTGGCCATGGGTGTTTGAACCTTTTGGTCTCTTTCACCTGGTTTAGAGGGACTTGGA GACAATTTACCCCACCCCCACGGAAGAGTCACCTTTGCCCAGTTGTCCACACACCCTGTT CTCCTAGGAAAAGGCTGGTCGAGGCTGCTGGGTCGGCCTTGACCATATACACAGACAGAG CCTGTGCTGGATCTGGCCCTGTCAAGGGGACCAGGGTCTTGTTCTCATCACTCCTTCCTA GTTCCACTGTTTATCCTTCTAAAATAAACAGGACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGTGGCCGGAAACCCCCCAGTCGCCCCAGCAGCTCTGCTTCCAAGAAACAGTACGTGTA AGGGCCTGGGGTTATGTCACCCCGCGGTGGGCCCGGGGACGTCTTGCTGCCTTTGATGTC CCCTCCTTGAAGGCTCTGCAGAGGTGAACTGGGGCTAGGGGAAGCAGCTGCGTACTGGGC ATAGGGCCTCGCTGCATGTTGTTCCTGAACACCTGGGGTCTTCCAGGTGACCAGAGAGCA CCACAGCTTCCCCTCCAGAACGCGGCCTGCCCCGGGCACAGACAGAGCCAGCGTGGGGTG CTCTTGGCCATGGGTGTTTGAACCTTTTGGTCTCTTTCACCTGGTTTAGAGGGACTTGGA GACAATTTACCCCACCCCCACGGAAGAGTCACCTTTGCCCAGTTGTCCACACACCCTGTT CTCCTAGGAAAAGGCTGGTCGAGGCTGCTGGGTCGGCCTTGACCATATACACAGACAGAG CCTGTGCTGGATCTGGCCCTGTCAAGGGGACCAGGGTCTTGTTCTCATCACTCCTTCCTA GTTCCACTGTTTATCCTTCTAAAATAAACAGGACTT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 486-576, - strand, RNAz p=0.664541 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 486-576, - strand, RNAz p=0.664541 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 6-283, gnl|bosTau2|chr26 (26570436-26570164) | |
| 6-283, gnl|Hg17|chr10 (119774562-119774315) | |
| 6-283, gnl|Mm7|chr19 (59846641-59846404) | |
| 469-576, gnl|bosTau2|chr3 (78119543-78119436) | |
| 469-576, gnl|canFam2|chr15 (10176033-10175823) | |
| 469-576, gnl|canFam2|chr27 (42014646-42014494) | |
| 469-576, gnl|canFam2|chr3 (33738391-33738521) | |
| 469-576, gnl|dasNov1|scaffold_170185 (897-694) | |
| 469-576, gnl|dasNov1|scaffold_170185 (850-695) | |
| 469-576, gnl|dasNov1|scaffold_26282 (16464-16640) | |
| 469-576, gnl|echTel1|scaffold_293390 (62557-62342) | |
| 469-576, gnl|echTel1|scaffold_293390 (62574-62376) | |
| 469-576, gnl|echTel1|scaffold_293390 (62551-62387) | |
| 469-576, gnl|hg17|chr1 (34930298-34930474) | |
| 469-576, gnl|Hg17|chr1 (34930337-34930433) | |
| 469-576, gnl|hg17|chr11 (55593167-55593319) | |
| 469-576, gnl|hg17|chr12 (83523968-83524147) | |
| 469-576, gnl|loxAfr1|scaffold_1545 (96965-96748) | |
| 469-576, gnl|loxAfr1|scaffold_1545 (97002-96782) | |
| 469-576, gnl|mm7|chr4 (126756217-126756037) | |
| 469-576, gnl|mm7|chr4 (126756252-126756070) | |
| 469-576, gnl|Mm7|chr4 (126756184-126756076) | |
| 469-576, gnl|oryCun1|scaffold_121915 (6462-6642) | |
| 469-576, gnl|oryCun1|scaffold_121915 (6427-6599) | |
| 469-576, gnl|oryCun1|scaffold_121915 (6464-6609) | |
| 469-576, gnl|panTro1|chr1 (35697369-35697545) | |
| 469-576, gnl|panTro1|chr10 (85412151-85412344) | |
| 469-576, gnl|panTro1|chr9 (56449016-56449168) | |
| 469-576, gnl|rheMac2|chr1 (37597477-37597651) | |
| 469-576, gnl|rheMac2|chr11 (81589188-81589369) | |
| 469-576, gnl|rheMac2|chr4 (5721908-5721762) | |
| 469-576, gnl|rn3|chr5 (146765253-146765069) | |
| 469-576, gnl|rn3|chr5 (146765293-146765102) | |
| 469-576, gnl|rn3|chr5 (146765243-146765088) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-283, gnl|bosTau2|chr26 (26570436-26570164) | |
| 6-283, gnl|Hg17|chr10 (119774562-119774315) | |
| 6-283, gnl|Mm7|chr19 (59846641-59846404) | |
| 469-576, gnl|bosTau2|chr3 (78119543-78119436) | |
| 469-576, gnl|canFam2|chr15 (10176033-10175823) | |
| 469-576, gnl|canFam2|chr27 (42014646-42014494) | |
| 469-576, gnl|canFam2|chr3 (33738391-33738521) | |
| 469-576, gnl|dasNov1|scaffold_170185 (897-694) | |
| 469-576, gnl|dasNov1|scaffold_170185 (850-695) | |
| 469-576, gnl|dasNov1|scaffold_26282 (16464-16640) | |
| 469-576, gnl|echTel1|scaffold_293390 (62557-62342) | |
| 469-576, gnl|echTel1|scaffold_293390 (62574-62376) | |
| 469-576, gnl|echTel1|scaffold_293390 (62551-62387) | |
| 469-576, gnl|hg17|chr1 (34930298-34930474) | |
| 469-576, gnl|Hg17|chr1 (34930337-34930433) | |
| 469-576, gnl|hg17|chr11 (55593167-55593319) | |
| 469-576, gnl|hg17|chr12 (83523968-83524147) | |
| 469-576, gnl|loxAfr1|scaffold_1545 (96965-96748) | |
| 469-576, gnl|loxAfr1|scaffold_1545 (97002-96782) | |
| 469-576, gnl|mm7|chr4 (126756217-126756037) | |
| 469-576, gnl|mm7|chr4 (126756252-126756070) | |
| 469-576, gnl|Mm7|chr4 (126756184-126756076) | |
| 469-576, gnl|oryCun1|scaffold_121915 (6462-6642) | |
| 469-576, gnl|oryCun1|scaffold_121915 (6427-6599) | |
| 469-576, gnl|oryCun1|scaffold_121915 (6464-6609) | |
| 469-576, gnl|panTro1|chr1 (35697369-35697545) | |
| 469-576, gnl|panTro1|chr10 (85412151-85412344) | |
| 469-576, gnl|panTro1|chr9 (56449016-56449168) | |
| 469-576, gnl|rheMac2|chr1 (37597477-37597651) | |
| 469-576, gnl|rheMac2|chr11 (81589188-81589369) | |
| 469-576, gnl|rheMac2|chr4 (5721908-5721762) | |
| 469-576, gnl|rn3|chr5 (146765253-146765069) | |
| 469-576, gnl|rn3|chr5 (146765293-146765102) | |
| 469-576, gnl|rn3|chr5 (146765243-146765088) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| eje (0.0988338) |