Non-Coding RNA Search

Ss1.1-rnlu1808b_e6.5

Sequence:


               
               CTTCCGGTGGCGGAACGGCGGTTTACCCTGTGCCCGGCAAAATGGAGCTTGAGGCCATGA
GCAGATACACCAGCCCGGTGAACCCAGCCGTCTTCCCCCACCTGACGGTGGTGCTGTTGG
CCATTGGCATGTTCTTTACCGCCTGGTTCTTCGTTTATGAAGTCACCTCCACCAAGTACA
CTCGGGATATCTACAAAGAGCTTCTCATCTCTTTGGTGGCCTCACTCTTCATGGGCTTTG
GAGTCCTGTTCCTGCTGCTGTGGGTCGGCATCTACGTATGAGCTCCCAAGGGTTCCAACC
AGGCGGCTTCACTGAATCCCTGCTTTTGTAAATTACTTGTTTTTTTTTACTATTGCTGGA
ATTGTCCCACCTGCTGCTCACAATAAAGGCAGACGTGTGGCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCGGTGGCGGAACGGCGGTTTACCCTGTGCCCGGCAAAATGGAGCTTGAGGCCATGA
GCAGATACACCAGCCCGGTGAACCCAGCCGTCTTCCCCCACCTGACGGTGGTGCTGTTGG
CCATTGGCATGTTCTTTACCGCCTGGTTCTTCGTTTATGAAGTCACCTCCACCAAGTACA
CTCGGGATATCTACAAAGAGCTTCTCATCTCTTTGGTGGCCTCACTCTTCATGGGCTTTG
GAGTCCTGTTCCTGCTGCTGTGGGTCGGCATCTACGTATGAGCTCCCAAGGGTTCCAACC
AGGCGGCTTCACTGAATCCCTGCTTTTGTAAATTACTTGTTTTTTTTTACTATTGCTGGA
ATTGTCCCACCTGCTGCTCACAATAAAGGCAGACGTGTGGCAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q76LT9_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q76LT9_CHICK

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               131-250, + strand, RNAz p=0.904604

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               131-250, + strand, RNAz p=0.904604

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               12-416, gnl|bosTau2|chr3 (71737131-71736720)
               

               
               12-416, gnl|Hg17|chr11 (5340392-5340787)
               

               
               12-416, gnl|Mm7|chr6 (101236692-101236298)
               


               
               44-158, gnl|bosTau2|chr29 (31722392-31722278)
               

               
               44-158, gnl|Hg17|chr11 (61314651-61314537)
               

               
               44-158, gnl|Mm7|chr19 (9886548-9886662)
               


               
               183-293, gnl|bosTau2|chr29 (31721756-31721646)
               

               
               183-293, gnl|Hg17|chr11 (61313941-61313831)
               

               
               183-293, gnl|Mm7|chr19 (9887317-9887427)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-416, gnl|bosTau2|chr3 (71737131-71736720)
               

               
               12-416, gnl|Hg17|chr11 (5340392-5340787)
               

               
               12-416, gnl|Mm7|chr6 (101236692-101236298)
               


               
               44-158, gnl|bosTau2|chr29 (31722392-31722278)
               

               
               44-158, gnl|Hg17|chr11 (61314651-61314537)
               

               
               44-158, gnl|Mm7|chr19 (9886548-9886662)
               


               
               183-293, gnl|bosTau2|chr29 (31721756-31721646)
               

               
               183-293, gnl|Hg17|chr11 (61313941-61313831)
               

               
               183-293, gnl|Mm7|chr19 (9887317-9887427)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               col (0.780031)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               nbm (0.297974)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.780031)
               

               
               ill (0.351185)
               

               
               duo (0.345602)
               

               
               sme (0.305437)
               

               
               nbm (0.297974)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               eje (0.197668)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	12-416, gnl\|bosTau2\|chr3 (71737131-71736720)
	12-416, gnl\|Hg17\|chr11 (5340392-5340787)
	12-416, gnl\|Mm7\|chr6 (101236692-101236298)

	44-158, gnl\|bosTau2\|chr29 (31722392-31722278)
	44-158, gnl\|Hg17\|chr11 (61314651-61314537)
	44-158, gnl\|Mm7\|chr19 (9886548-9886662)

	183-293, gnl\|bosTau2\|chr29 (31721756-31721646)
	183-293, gnl\|Hg17\|chr11 (61313941-61313831)
	183-293, gnl\|Mm7\|chr19 (9887317-9887427)

	col (0.780031)
	ill (0.351185)
	duo (0.345602)
	sme (0.305437)
	nbm (0.297974)
	nmm (0.265604)
	ese (0.253004)
	cly (0.241284)
	ebs (0.236602)
	ecc (0.23007)
	nms (0.213858)
	eje (0.197668)
	nlu (0.191681)
	nep (0.183925)
	rec (0.17307)
	mcp (0.170648)
	nje (0.16592)
	cag (0.151194)
	pty (0.142714)
	lnt (0.142308)
	nca (0.136874)
	ute (0.132784)
	eep (0.122564)
	eru (0.120048)
	med (0.116252)
	jej (0.0989218)