Non-Coding RNA Search

Ss1.1-rnlu1812b_o17.5

Sequence:


               
               AAGCCTTGGAAACCTTACCTTGGCTCTTTGGACTTTGTATACTTTAAATAATTTAACTAC
CCTTAATTACTTAAAAAAGAAAAAAAAAGCTTTATGATTTTCATAACTTATTGCTGATTT
TAATGGGTTGTTAATTTCAGTCCTGTAGTTTTATTTTGTTTAGATAGGGCTGGGCAAGGA
AAAAGGAAATAAAGACAACCATATTTAGCAGTGCAGATGAGTTGTGTGTGTAATGTTAGA
CTATCCTTTGTAAGTAGCACTTTAACAGCTCTCACTGCTTCTATATATGAAGTGAACCAT
CTTGGTCATACACAAGGCCTCATCATATATTTACTTGTCCTTGTGCTCTTCCTGTGCCTC
CAAAAATATTTTATCCTTGATTGTGGTATGTATGAGTGGAAGAAATTCTTTGAAATAGAT
GTGTGAAAAACTGCATGCCTTTAGAAGCCCATTATTAGAACTTGTTACTTCAGGTGCTGG
GGACTTAATGAAAAACATGATAAATTCATTTCTGCGGCCCAGGTAAATTATTTCTGGTTT
CATTTATAATTACTCCTGGCCAGGTCAAAATGTTGCCCTATATATTTGTTTTCCCAAGGG
AGACAGTTTGAAGACTGCTAAGTACCTTGGAAAGTAAATGGAAGCCAATGACAGAATTTC
CATTTTGTTGTTCCCAGGGCATTCATTTGCATCACTTGTCTAGGGCTGGAATTTGGGACT
TTATTCAGGTGAACTTGAGGTGCTGCCATTTTGTTGTGTATGTACAGGATGGTGGGCTGG
GAAGCCTTTGTCACAAACCTATAGTACTTATTTCAACTCCCCCCTAAATTACTCCTTCCC
TGGATTTGTTTTCCTTGGGGGAGGGGAATGGATTGTATGATGAGTAAGAAGTATTAATTT
TTTAAAAGACAAATCGACTTTGAAGATACAAAAAGTTAACTGCAAGAAATAAAAATTGTG
AATGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCTTGGAAACCTTACCTTGGCTCTTTGGACTTTGTATACTTTAAATAATTTAACTAC
CCTTAATTACTTAAAAAAGAAAAAAAAAGCTTTATGATTTTCATAACTTATTGCTGATTT
TAATGGGTTGTTAATTTCAGTCCTGTAGTTTTATTTTGTTTAGATAGGGCTGGGCAAGGA
AAAAGGAAATAAAGACAACCATATTTAGCAGTGCAGATGAGTTGTGTGTGTAATGTTAGA
CTATCCTTTGTAAGTAGCACTTTAACAGCTCTCACTGCTTCTATATATGAAGTGAACCAT
CTTGGTCATACACAAGGCCTCATCATATATTTACTTGTCCTTGTGCTCTTCCTGTGCCTC
CAAAAATATTTTATCCTTGATTGTGGTATGTATGAGTGGAAGAAATTCTTTGAAATAGAT
GTGTGAAAAACTGCATGCCTTTAGAAGCCCATTATTAGAACTTGTTACTTCAGGTGCTGG
GGACTTAATGAAAAACATGATAAATTCATTTCTGCGGCCCAGGTAAATTATTTCTGGTTT
CATTTATAATTACTCCTGGCCAGGTCAAAATGTTGCCCTATATATTTGTTTTCCCAAGGG
AGACAGTTTGAAGACTGCTAAGTACCTTGGAAAGTAAATGGAAGCCAATGACAGAATTTC
CATTTTGTTGTTCCCAGGGCATTCATTTGCATCACTTGTCTAGGGCTGGAATTTGGGACT
TTATTCAGGTGAACTTGAGGTGCTGCCATTTTGTTGTGTATGTACAGGATGGTGGGCTGG
GAAGCCTTTGTCACAAACCTATAGTACTTATTTCAACTCCCCCCTAAATTACTCCTTCCC
TGGATTTGTTTTCCTTGGGGGAGGGGAATGGATTGTATGATGAGTAAGAAGTATTAATTT
TTTAAAAGACAAATCGACTTTGAAGATACAAAAAGTTAACTGCAAGAAATAAAAATTGTG
AATGAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-969, gnl|bosTau2|chr26 (19432998-19432024)
               

               
               1-969, gnl|Hg17|chr10 (112036165-112037113)
               

               
               1-969, gnl|Mm7|chr19 (53275005-53276056)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-969, gnl|bosTau2|chr26 (19432998-19432024)
               

               
               1-969, gnl|Hg17|chr10 (112036165-112037113)
               

               
               1-969, gnl|Mm7|chr19 (53275005-53276056)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               gul (0.355177)
               

               
               pan (0.23596)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               pan (0.23596)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

	1-969, gnl\|bosTau2\|chr26 (19432998-19432024)
	1-969, gnl\|Hg17\|chr10 (112036165-112037113)
	1-969, gnl\|Mm7\|chr19 (53275005-53276056)

	gul (0.355177)
	pan (0.23596)
	fcc (0.197785)
	aor (0.195274)
	nlu (0.191681)
	nco (0.161734)
	fco (0.157208)
	pla (0.133672)
	bla (0.124347)