Ss1.1-rnlu1813b_f21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCACGCTCTGAAGAGGCTGAGGGACTCTGCCAATGCCAATGACGTGGAAACAGTGCAG CAGCTGCTGGAAGATGGCGCGGACCCCTTTGCAGCTGATGACAAGGGCCGCACCGCTCTC CACTTTGCCTCCTGCAACGGCAATGACCAGATCGTGCAGCTGCTCCTGGACCACGGAGCT GACCCCAACCAGCGAGATGGGCTGGGGAACACACCACTGCACCTGGCGGCCTGCACCAAC CATGTCCCTGTCATCACCACTCTGCTGCGAGGAGGGGCCCGTGTAGATGCCCTGGACCGG GCTGGCCGCACGCCCCTGCACCTGGCTAAGTCAAAGCTCAGCATCCTGCAGGAAGGCCAT TCCCATTGCCTCGAGGCTGTGCGGCTGGAGGTGAAGCAGATCATCCAGATGCTGCGGGAG TACCTGGAGCGCCTGGGGCGGCATGAGCAGCGCGAGCGGCTGGACGACCTCTGCACCCGC CTCCAGATGACAAGCACCAAGGAGCAGGTGGATGAAGTGACCGACCTCCTGGCCAGCTTC ACCTCCCTCAGCCTGCAGATGCAGGACATGGAGAAGAGGTAGCGAGAGGCTCCCCGCCTT CCCGCTCCGCCGCCACCCCACTGCCCCCGCGCTCTCATCACAGAGGAAAAGCCCGGTGCC TCGCCCCCCAGCTGCTGCAGATGCTCCCCCACCGACCTCGGAGCCACTCCCCGCCGGGGT CTGTAGCGTCTCTGTGGGCCGGGACCACAGCCCCGGCTTCCTCCTTCGGCTCCCTCGGCA CCGCAGCCACACCTCGGCTCTGACCAACATGCGATGTCCTAGCAGGCCCCCCCTCGCCTC CCTGGCACCCCCAGCCCACCCCAGACCCTTCCCTGTGTCCCCTGGTTGCAGCCAGCAAGA CTGGGCTTCGGGCAAGCACCCTGTGGCCTAGGGGGCCTCTCGGCCGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCACGCTCTGAAGAGGCTGAGGGACTCTGCCAATGCCAATGACGTGGAAACAGTGCAG CAGCTGCTGGAAGATGGCGCGGACCCCTTTGCAGCTGATGACAAGGGCCGCACCGCTCTC CACTTTGCCTCCTGCAACGGCAATGACCAGATCGTGCAGCTGCTCCTGGACCACGGAGCT GACCCCAACCAGCGAGATGGGCTGGGGAACACACCACTGCACCTGGCGGCCTGCACCAAC CATGTCCCTGTCATCACCACTCTGCTGCGAGGAGGGGCCCGTGTAGATGCCCTGGACCGG GCTGGCCGCACGCCCCTGCACCTGGCTAAGTCAAAGCTCAGCATCCTGCAGGAAGGCCAT TCCCATTGCCTCGAGGCTGTGCGGCTGGAGGTGAAGCAGATCATCCAGATGCTGCGGGAG TACCTGGAGCGCCTGGGGCGGCATGAGCAGCGCGAGCGGCTGGACGACCTCTGCACCCGC CTCCAGATGACAAGCACCAAGGAGCAGGTGGATGAAGTGACCGACCTCCTGGCCAGCTTC ACCTCCCTCAGCCTGCAGATGCAGGACATGGAGAAGAGGTAGCGAGAGGCTCCCCGCCTT CCCGCTCCGCCGCCACCCCACTGCCCCCGCGCTCTCATCACAGAGGAAAAGCCCGGTGCC TCGCCCCCCAGCTGCTGCAGATGCTCCCCCACCGACCTCGGAGCCACTCCCCGCCGGGGT CTGTAGCGTCTCTGTGGGCCGGGACCACAGCCCCGGCTTCCTCCTTCGGCTCCCTCGGCA CCGCAGCCACACCTCGGCTCTGACCAACATGCGATGTCCTAGCAGGCCCCCCCTCGCCTC CCTGGCACCCCCAGCCCACCCCAGACCCTTCCCTGTGTCCCCTGGTTGCAGCCAGCAAGA CTGGGCTTCGGGCAAGCACCCTGTGGCCTAGGGGGCCTCTCGGCCGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 505-623, - strand, RNAz p=0.655223 | |
| 771-948, - strand, RNAz p=0.668964 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 505-623, - strand, RNAz p=0.655223 | |
| 771-948, - strand, RNAz p=0.668964 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK127583, - |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 273-415, gnl|bosTau2|chr5 (67154080-67154223) | |
| 273-415, gnl|canFam2|chr10 (29876654-29876454) | |
| 273-415, gnl|canFam2|chr10 (29876647-29876404) | |
| 273-415, gnl|dasNov1|scaffold_9137 (41457-41254) | |
| 273-415, gnl|dasNov1|scaffold_9137 (41450-41204) | |
| 273-415, gnl|echTel1|scaffold_252479 (1135-935) | |
| 273-415, gnl|echTel1|scaffold_252479 (1128-872) | |
| 273-415, gnl|fr1|chrUn (295640900-295640584) | |
| 273-415, gnl|galGal2|chr1 (47810669-47810421) | |
| 273-415, gnl|hg17|chr10 (44967075-44967244) | |
| 273-415, gnl|hg17|chr22 (36553462-36553663) | |
| 273-415, gnl|Hg17|chr22 (36553591-36553426) | |
| 273-415, gnl|loxAfr1|scaffold_26966 (5595-5802) | |
| 273-415, gnl|loxAfr1|scaffold_26966 (5602-5852) | |
| 273-415, gnl|mm7|chr15 (79138241-79138444) | |
| 273-415, gnl|mm7|chr15 (79138248-79138494) | |
| 273-415, gnl|Mm7|chr15 (79138370-79138237) | |
| 273-415, gnl|monDom2|scaffold_143 (647560-647802) | |
| 273-415, gnl|monDom2|scaffold_297 (137511-137288) | |
| 273-415, gnl|panTro1|chr23 (36733518-36733719) | |
| 273-415, gnl|panTro1|chr8 (45761106-45761275) | |
| 273-415, gnl|rheMac2|chr10 (81757202-81757405) | |
| 273-415, gnl|rheMac2|chr9 (45380122-45380291) | |
| 273-415, gnl|rn3|chr7 (117062715-117062920) | |
| 273-415, gnl|rn3|chr7 (117062722-117062970) | |
| 505-948, gnl|bosTau2|chr5 (67154772-67155265) | |
| 505-948, gnl|canFam2|chr10 (29877852-29877478) | |
| 505-948, gnl|dasNov1|scaffold_9137 (42585-42212) | |
| 505-948, gnl|hg17|chr22 (36551975-36552377) | |
| 505-948, gnl|Hg17|chr22 (36552527-36551999) | |
| 505-948, gnl|loxAfr1|scaffold_26966 (4344-4769) | |
| 505-948, gnl|mm7|chr15 (79136576-79136895) | |
| 505-948, gnl|Mm7|chr15 (79137039-79136601) | |
| 505-948, gnl|monDom2|scaffold_297 (140929-140530) | |
| 505-948, gnl|oryCun1|scaffold_159006 (11692-11362) | |
| 505-948, gnl|panTro1|chr23 (36732044-36732446) | |
| 505-948, gnl|rheMac2|chr10 (81755707-81756110) | |
| 505-948, gnl|rn3|chr7 (117060902-117061225) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 273-415, gnl|bosTau2|chr5 (67154080-67154223) | |
| 273-415, gnl|canFam2|chr10 (29876654-29876454) | |
| 273-415, gnl|canFam2|chr10 (29876647-29876404) | |
| 273-415, gnl|dasNov1|scaffold_9137 (41457-41254) | |
| 273-415, gnl|dasNov1|scaffold_9137 (41450-41204) | |
| 273-415, gnl|echTel1|scaffold_252479 (1135-935) | |
| 273-415, gnl|echTel1|scaffold_252479 (1128-872) | |
| 273-415, gnl|fr1|chrUn (295640900-295640584) | |
| 273-415, gnl|galGal2|chr1 (47810669-47810421) | |
| 273-415, gnl|hg17|chr10 (44967075-44967244) | |
| 273-415, gnl|hg17|chr22 (36553462-36553663) | |
| 273-415, gnl|Hg17|chr22 (36553591-36553426) | |
| 273-415, gnl|loxAfr1|scaffold_26966 (5595-5802) | |
| 273-415, gnl|loxAfr1|scaffold_26966 (5602-5852) | |
| 273-415, gnl|mm7|chr15 (79138241-79138444) | |
| 273-415, gnl|mm7|chr15 (79138248-79138494) | |
| 273-415, gnl|Mm7|chr15 (79138370-79138237) | |
| 273-415, gnl|monDom2|scaffold_143 (647560-647802) | |
| 273-415, gnl|monDom2|scaffold_297 (137511-137288) | |
| 273-415, gnl|panTro1|chr23 (36733518-36733719) | |
| 273-415, gnl|panTro1|chr8 (45761106-45761275) | |
| 273-415, gnl|rheMac2|chr10 (81757202-81757405) | |
| 273-415, gnl|rheMac2|chr9 (45380122-45380291) | |
| 273-415, gnl|rn3|chr7 (117062715-117062920) | |
| 273-415, gnl|rn3|chr7 (117062722-117062970) | |
| 505-948, gnl|bosTau2|chr5 (67154772-67155265) | |
| 505-948, gnl|canFam2|chr10 (29877852-29877478) | |
| 505-948, gnl|dasNov1|scaffold_9137 (42585-42212) | |
| 505-948, gnl|hg17|chr22 (36551975-36552377) | |
| 505-948, gnl|Hg17|chr22 (36552527-36551999) | |
| 505-948, gnl|loxAfr1|scaffold_26966 (4344-4769) | |
| 505-948, gnl|mm7|chr15 (79136576-79136895) | |
| 505-948, gnl|Mm7|chr15 (79137039-79136601) | |
| 505-948, gnl|monDom2|scaffold_297 (140929-140530) | |
| 505-948, gnl|oryCun1|scaffold_159006 (11692-11362) | |
| 505-948, gnl|panTro1|chr23 (36732044-36732446) | |
| 505-948, gnl|rheMac2|chr10 (81755707-81756110) | |
| 505-948, gnl|rn3|chr7 (117060902-117061225) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| med (0.116252) | |
| jca (0.11396) |