Ss1.1-rnlu1813b_g16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGGCAGCAAGGGGGCCTGTTCTGTGCTGTCCCCCCACTTCCCTGGCCGACGGCTCTGG GTGTCACCTGGTCCCAGGTGAGGAAGTATGTGCTGTGTGCATCCTTTACATCTTTGCTTT CTTCTGTTTGGATTGCAGAGTTTCAGAGGCAGGAAAGCGTCCGGTCCCAGCACAAGGGCA TCCAGTTATACGATACCCCTTATGAACCCGAGGGCCAGAGCGTGGACTCATACTCCGAGA GCACGGTCAGCCCCCGCCTGCGGGAGATCAAGCTGCCCCATGACGACGACAGGCCCGCCG ATGATTACGACCAGCCGTGGGAGTGGAACCGGGTGCACCATCCCATCTCTGGCAGCCCAT TTTAATGGCAACGAGAAACGGCAGTCATCCCCCTCACCTTCCCGAGACCGGCGGCGCCAG CTTCGATCTCCTGGCGGGGGCTTCAAGCCCATCAAACATGGGATCCCCGAGTTCTGTGGG ATCCTGGGAGATATAGTGGATCCTTCTGTCCCCCTGGAGAATCAAATATGGTATCATGGA GCCATCATCAGATGATACGCCGAGAACCTGCTGCGACTCTGCAAGGAGTGTAGCTACCTT GTCCGGAACAGCCATACCATCAGGCACGACTACTCCCTCTCCCTGAATATCAACCATGGC TTCATGCACATGAAACTGGCCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGGCAGCAAGGGGGCCTGTTCTGTGCTGTCCCCCCACTTCCCTGGCCGACGGCTCTGG GTGTCACCTGGTCCCAGGTGAGGAAGTATGTGCTGTGTGCATCCTTTACATCTTTGCTTT CTTCTGTTTGGATTGCAGAGTTTCAGAGGCAGGAAAGCGTCCGGTCCCAGCACAAGGGCA TCCAGTTATACGATACCCCTTATGAACCCGAGGGCCAGAGCGTGGACTCATACTCCGAGA GCACGGTCAGCCCCCGCCTGCGGGAGATCAAGCTGCCCCATGACGACGACAGGCCCGCCG ATGATTACGACCAGCCGTGGGAGTGGAACCGGGTGCACCATCCCATCTCTGGCAGCCCAT TTTAATGGCAACGAGAAACGGCAGTCATCCCCCTCACCTTCCCGAGACCGGCGGCGCCAG CTTCGATCTCCTGGCGGGGGCTTCAAGCCCATCAAACATGGGATCCCCGAGTTCTGTGGG ATCCTGGGAGATATAGTGGATCCTTCTGTCCCCCTGGAGAATCAAATATGGTATCATGGA GCCATCATCAGATGATACGCCGAGAACCTGCTGCGACTCTGCAAGGAGTGTAGCTACCTT GTCCGGAACAGCCATACCATCAGGCACGACTACTCCCTCTCCCTGAATATCAACCATGGC TTCATGCACATGAAACTGGCCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 52-156, + strand, RNAz p=0.927479 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 52-156, + strand, RNAz p=0.927479 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 13-355, gnl|bosTau2|chr8 (29142712-29142361) | |
| 13-355, gnl|Hg17|chr9 (37964962-37964619) | |
| 528-647, gnl|bosTau2|chr8 (29116699-29116580) | |
| 528-647, gnl|canFam2|chr11 (57244333-57244486) | |
| 528-647, gnl|danRer3|chrNA (204186564-204186710) | |
| 528-647, gnl|dasNov1|scaffold_112131 (2920-2766) | |
| 528-647, gnl|echTel1|scaffold_194852 (3094-2941) | |
| 528-647, gnl|fr1|chrUn (94014338-94014182) | |
| 528-647, gnl|galGal2|chrZ (23806980-23806836) | |
| 528-647, gnl|hg17|chr9 (37938626-37938782) | |
| 528-647, gnl|Hg17|chr9 (37938751-37938632) | |
| 528-647, gnl|loxAfr1|scaffold_209130 (797-641) | |
| 528-647, gnl|mm7|chr4 (45458487-45458644) | |
| 528-647, gnl|Mm7|chr4 (45458612-45458493) | |
| 528-647, gnl|monDom2|scaffold_19 (11001328-11001471) | |
| 528-647, gnl|oryCun1|scaffold_213714 (144496-144639) | |
| 528-647, gnl|panTro1|chr16 (43198081-43198206) | |
| 528-647, gnl|rheMac2|chr15 (39467512-39467356) | |
| 528-647, gnl|rn3|chr5 (62004798-62004956) | |
| 528-647, gnl|tetNig1|chr10 (8696223-8696371) | |
| 528-647, gnl|xenTro1|scaffold_153 (721892-722020) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-355, gnl|bosTau2|chr8 (29142712-29142361) | |
| 13-355, gnl|Hg17|chr9 (37964962-37964619) | |
| 528-647, gnl|bosTau2|chr8 (29116699-29116580) | |
| 528-647, gnl|canFam2|chr11 (57244333-57244486) | |
| 528-647, gnl|danRer3|chrNA (204186564-204186710) | |
| 528-647, gnl|dasNov1|scaffold_112131 (2920-2766) | |
| 528-647, gnl|echTel1|scaffold_194852 (3094-2941) | |
| 528-647, gnl|fr1|chrUn (94014338-94014182) | |
| 528-647, gnl|galGal2|chrZ (23806980-23806836) | |
| 528-647, gnl|hg17|chr9 (37938626-37938782) | |
| 528-647, gnl|Hg17|chr9 (37938751-37938632) | |
| 528-647, gnl|loxAfr1|scaffold_209130 (797-641) | |
| 528-647, gnl|mm7|chr4 (45458487-45458644) | |
| 528-647, gnl|Mm7|chr4 (45458612-45458493) | |
| 528-647, gnl|monDom2|scaffold_19 (11001328-11001471) | |
| 528-647, gnl|oryCun1|scaffold_213714 (144496-144639) | |
| 528-647, gnl|panTro1|chr16 (43198081-43198206) | |
| 528-647, gnl|rheMac2|chr15 (39467512-39467356) | |
| 528-647, gnl|rn3|chr5 (62004798-62004956) | |
| 528-647, gnl|tetNig1|chr10 (8696223-8696371) | |
| 528-647, gnl|xenTro1|scaffold_153 (721892-722020) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) |