Ss1.1-rnlu1813b_g21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGTGCTGGTCCTCAGTCTGTGGGGGGTAGCAGTAAGTGATCAAAACATCACAGCCCGG ATCGGGAAGCCACTGGTGCTGAACTGTAAGGGGGCCCCCAAGAAACCACCCCAGCAGCTG GAATGGAAACTGAACACAGGCCGGACAGAAGCTTGGAAGGTCCTGACTCCCCAGGGAGGC CCCTGGGACAGTGTGGCACGGGTCCTCCCCAATGGCTCCCTCCTCCTGCCGGCTGTTGGG ATCCAGGACGAGGGGACTTTCCGGTGTCGGGCAACGAGCCGGAACGGAAAGGAGACCAAG TCCAACTACCGAGTCCAAGTCTACCAGATTCCTGGGAAGCCGGACATTGTTGATCCTGCC TCTGAACTCATGGCTGGTGTCCCCAACAAGGTGGGGACTTGTGTGTCTGAGGGGGGCTAC CCTGCAGGGACTCTTAGCTGGCACTTGGATGGAAAAACTCTGATACCTGACGGCAAAGGA GTGTCTGTGAAGGAAGAGACCAGGAGACACCCCGAGACAGGGCTTTTCACACTCCACTCC GAGTTGATGGTGACCCCGGCCTGGGGAGGAGCTCCCCAACCCACCTTCTCCTGTAGCTTC AGCCCGAGCTTTCCCCGGCGCCGAGCCCTGCACACAGCTCCCATCCGGCCCAGTGTCTGG GAGCCTGTGCCCCTGGAGGAAGTCCAGTTGGTGGTAGAGCCAGCAGGTGGAGCTGTACCT CCTGGTGGGACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGTGCTGGTCCTCAGTCTGTGGGGGGTAGCAGTAAGTGATCAAAACATCACAGCCCGG ATCGGGAAGCCACTGGTGCTGAACTGTAAGGGGGCCCCCAAGAAACCACCCCAGCAGCTG GAATGGAAACTGAACACAGGCCGGACAGAAGCTTGGAAGGTCCTGACTCCCCAGGGAGGC CCCTGGGACAGTGTGGCACGGGTCCTCCCCAATGGCTCCCTCCTCCTGCCGGCTGTTGGG ATCCAGGACGAGGGGACTTTCCGGTGTCGGGCAACGAGCCGGAACGGAAAGGAGACCAAG TCCAACTACCGAGTCCAAGTCTACCAGATTCCTGGGAAGCCGGACATTGTTGATCCTGCC TCTGAACTCATGGCTGGTGTCCCCAACAAGGTGGGGACTTGTGTGTCTGAGGGGGGCTAC CCTGCAGGGACTCTTAGCTGGCACTTGGATGGAAAAACTCTGATACCTGACGGCAAAGGA GTGTCTGTGAAGGAAGAGACCAGGAGACACCCCGAGACAGGGCTTTTCACACTCCACTCC GAGTTGATGGTGACCCCGGCCTGGGGAGGAGCTCCCCAACCCACCTTCTCCTGTAGCTTC AGCCCGAGCTTTCCCCGGCGCCGAGCCCTGCACACAGCTCCCATCCGGCCCAGTGTCTGG GAGCCTGTGCCCCTGGAGGAAGTCCAGTTGGTGGTAGAGCCAGCAGGTGGAGCTGTACCT CCTGGTGGGACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 513-632, - strand, RNAz p=0.513317 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 513-632, - strand, RNAz p=0.513317 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 132-323, gnl|bosTau2|chr23 (23687461-23687652) | |
| 132-323, gnl|canFam2|chr12 (4579069-4579381) | |
| 132-323, gnl|echTel1|scaffold_201277 (5540-5232) | |
| 132-323, gnl|hg17|chr6 (32259234-32259552) | |
| 132-323, gnl|Hg17|chr6 (32259506-32259312) | |
| 132-323, gnl|loxAfr1|scaffold_32936 (8715-8404) | |
| 132-323, gnl|mm7|chr17 (32683198-32682883) | |
| 132-323, gnl|Mm7|chr17 (32682925-32683116) | |
| 132-323, gnl|monDom2|scaffold_42 (17146704-17146407) | |
| 132-323, gnl|oryCun1|scaffold_192689 (5783-5466) | |
| 132-323, gnl|panTro1|chr5 (32627811-32628129) | |
| 132-323, gnl|rheMac2|chr4 (31805434-31805750) | |
| 132-323, gnl|rn3|chr20 (4252914-4253252) | |
| 474-660, gnl|bosTau2|chr23 (23688398-23688584) | |
| 474-660, gnl|canFam2|chr12 (4578250-4578642) | |
| 474-660, gnl|hg17|chr6 (32258359-32258799) | |
| 474-660, gnl|Hg17|chr6 (32258783-32258597) | |
| 474-660, gnl|loxAfr1|scaffold_32936 (9585-9153) | |
| 474-660, gnl|mm7|chr17 (32683988-32683602) | |
| 474-660, gnl|Mm7|chr17 (32683617-32683800) | |
| 474-660, gnl|monDom2|scaffold_42 (17147644-17147188) | |
| 474-660, gnl|oryCun1|scaffold_192689 (6685-6280) | |
| 474-660, gnl|panTro1|chr5 (32626936-32627376) | |
| 474-660, gnl|rheMac2|chr4 (31804568-31805008) | |
| 474-660, gnl|rn3|chr20 (4252112-4252518) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 132-323, gnl|bosTau2|chr23 (23687461-23687652) | |
| 132-323, gnl|canFam2|chr12 (4579069-4579381) | |
| 132-323, gnl|echTel1|scaffold_201277 (5540-5232) | |
| 132-323, gnl|hg17|chr6 (32259234-32259552) | |
| 132-323, gnl|Hg17|chr6 (32259506-32259312) | |
| 132-323, gnl|loxAfr1|scaffold_32936 (8715-8404) | |
| 132-323, gnl|mm7|chr17 (32683198-32682883) | |
| 132-323, gnl|Mm7|chr17 (32682925-32683116) | |
| 132-323, gnl|monDom2|scaffold_42 (17146704-17146407) | |
| 132-323, gnl|oryCun1|scaffold_192689 (5783-5466) | |
| 132-323, gnl|panTro1|chr5 (32627811-32628129) | |
| 132-323, gnl|rheMac2|chr4 (31805434-31805750) | |
| 132-323, gnl|rn3|chr20 (4252914-4253252) | |
| 474-660, gnl|bosTau2|chr23 (23688398-23688584) | |
| 474-660, gnl|canFam2|chr12 (4578250-4578642) | |
| 474-660, gnl|hg17|chr6 (32258359-32258799) | |
| 474-660, gnl|Hg17|chr6 (32258783-32258597) | |
| 474-660, gnl|loxAfr1|scaffold_32936 (9585-9153) | |
| 474-660, gnl|mm7|chr17 (32683988-32683602) | |
| 474-660, gnl|Mm7|chr17 (32683617-32683800) | |
| 474-660, gnl|monDom2|scaffold_42 (17147644-17147188) | |
| 474-660, gnl|oryCun1|scaffold_192689 (6685-6280) | |
| 474-660, gnl|panTro1|chr5 (32626936-32627376) | |
| 474-660, gnl|rheMac2|chr4 (31804568-31805008) | |
| 474-660, gnl|rn3|chr20 (4252112-4252518) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (1.34177) | |
| clu (0.478583) |