Non-Coding RNA Search

Ss1.1-rnlu1814b_n22.5

Sequence:


               
               CGAGACTGAGACCCAGGACCCCGACAGCACCAACAGCCTGGAGAGTGAGGCCCCCAGGGA
TTACTTCCTCAAGTTTGCCTACATCGTGGACCTGGACAGCGACACGGCCGACAAGTTCCT
GCAGCTGTTTGGAACCAAGGGTGTGAAAAGGGTGCTGTGTCCCATCAACTACCCTGAGTC
ACCCACCCGCTTCACCCACTGCGAGCAGGTGCTGGGCGAGGGCGCCCTGGACCGGGGCAC
CTACTACTGGGAGGTGGAGATCATTGAAGGCTGGGTCAGCGTGGGGGTCATGGCCGAGGA
CTTCTCCCCCCTGGAGCCCTACGACCGGGGCCGGCTCGGCCGCAATGCCCACTCCTGCTG
CCTGCAGTGGAATGGACGCAGCTTCTCCGTCTGGTTCCACGGGCTGGAGGCGGCCCTGCC
CCACCCTTTCTCGCCCACCGTCGGGATCTGCCTGGAATATGCCGACCGAGCCCTGGCCTT
CTACGCCGTGCAGGACGGCAAGATGAGCCTTCTGCGGAGGCTGAAGGCCTCCCGGGCCCG
CCGGACTGGCACCCCGGCCTCCCCCGTTGACCCCTTCCAGAGCCGCCTGGACAGCCACTT
TGCCGGGCTCTTCACACGCAGGCTCAAGCCCGCCTTCTTCCTGGAGAGTGTGGACGCCCA
TCTGCAGATCGGGCCCCTCAAGAAGTCCTGCATATCTGTGCTGAAGAGGAGGTGATGCTG
GGGGCCGGGGACCTCCTCCTGCTGCTGTCCCAGCTCCTGGGACGCTTGCTTCTCTGCATC
CCTGTTTTGCTCCGGGGGAGTCACCAGCCCTGGAGTCCCACTCATTCCCCACCTGCCATG
TACACGGCTTTCCGCCTTCAGGGAGGAGGCTCCTGGGACTCTGTCCCCCTGCAGGCCTTG
TTTCTGGGAGAAAGAGCCGCAGCTTGGACAGTGCCAGGCCACCCCAGCCCCTGCTCTCCC
CGGTTCCTGGGACAGTGCCTGGCACATAGTAGGTGCTCAATAAACATTTGTGGAATGAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGACTGAGACCCAGGACCCCGACAGCACCAACAGCCTGGAGAGTGAGGCCCCCAGGGA
TTACTTCCTCAAGTTTGCCTACATCGTGGACCTGGACAGCGACACGGCCGACAAGTTCCT
GCAGCTGTTTGGAACCAAGGGTGTGAAAAGGGTGCTGTGTCCCATCAACTACCCTGAGTC
ACCCACCCGCTTCACCCACTGCGAGCAGGTGCTGGGCGAGGGCGCCCTGGACCGGGGCAC
CTACTACTGGGAGGTGGAGATCATTGAAGGCTGGGTCAGCGTGGGGGTCATGGCCGAGGA
CTTCTCCCCCCTGGAGCCCTACGACCGGGGCCGGCTCGGCCGCAATGCCCACTCCTGCTG
CCTGCAGTGGAATGGACGCAGCTTCTCCGTCTGGTTCCACGGGCTGGAGGCGGCCCTGCC
CCACCCTTTCTCGCCCACCGTCGGGATCTGCCTGGAATATGCCGACCGAGCCCTGGCCTT
CTACGCCGTGCAGGACGGCAAGATGAGCCTTCTGCGGAGGCTGAAGGCCTCCCGGGCCCG
CCGGACTGGCACCCCGGCCTCCCCCGTTGACCCCTTCCAGAGCCGCCTGGACAGCCACTT
TGCCGGGCTCTTCACACGCAGGCTCAAGCCCGCCTTCTTCCTGGAGAGTGTGGACGCCCA
TCTGCAGATCGGGCCCCTCAAGAAGTCCTGCATATCTGTGCTGAAGAGGAGGTGATGCTG
GGGGCCGGGGACCTCCTCCTGCTGCTGTCCCAGCTCCTGGGACGCTTGCTTCTCTGCATC
CCTGTTTTGCTCCGGGGGAGTCACCAGCCCTGGAGTCCCACTCATTCCCCACCTGCCATG
TACACGGCTTTCCGCCTTCAGGGAGGAGGCTCCTGGGACTCTGTCCCCCTGCAGGCCTTG
TTTCTGGGAGAAAGAGCCGCAGCTTGGACAGTGCCAGGCCACCCCAGCCCCTGCTCTCCC
CGGTTCCTGGGACAGTGCCTGGCACATAGTAGGTGCTCAATAAACATTTGTGGAATGAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40225603|gb|AAH09225.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40225603|gb|AAH09225.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               474-593, - strand, RNAz p=0.526151
               

               
               819-976, - strand, RNAz p=0.997619

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               474-593, - strand, RNAz p=0.526151
               

               
               819-976, - strand, RNAz p=0.997619

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               75-1010, gnl|bosTau2|chr19 (49670544-49671472)
               

               
               75-1010, gnl|Hg17|chr17 (71382799-71381849)
               

               
               75-1010, gnl|Mm7|chr11 (116215686-116214806)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-1010, gnl|bosTau2|chr19 (49670544-49671472)
               

               
               75-1010, gnl|Hg17|chr17 (71382799-71381849)
               

               
               75-1010, gnl|Mm7|chr11 (116215686-116214806)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               jca (0.45584)
               

               
               nca (0.273748)
               

               
               nlu (0.191681)
               

               
               pla (0.133672)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.45584)
               

               
               nca (0.273748)
               

               
               nlu (0.191681)
               

               
               pla (0.133672)
               

               
               eje (0.0988338)

	474-593, - strand, RNAz p=0.526151
	819-976, - strand, RNAz p=0.997619

	75-1010, gnl\|bosTau2\|chr19 (49670544-49671472)
	75-1010, gnl\|Hg17\|chr17 (71382799-71381849)
	75-1010, gnl\|Mm7\|chr11 (116215686-116214806)

	jca (0.45584)
	nca (0.273748)
	nlu (0.191681)
	pla (0.133672)
	eje (0.0988338)