Non-Coding RNA Search

Ss1.1-rnlu1815b_d5.5

Sequence:


               
               GGTTCTCATCAGCATCGTCCTCATTGTCCTCATCGCCCTCAACGTCCTCCTCTTTTACCG
CCTCTGGTCCCTGGAGAGGACGGCCCACACTTTCGAGTCCTGGCATAGTCTGGCCCTGGC
CAAGGGCAAGTTCCCCCAGACGGCCACGGAGTGGGCGGAGATCCTGGCCCTGCAAAAGCA
GTTCCACAGTGTCGAGGTGCACAAGTGGAGGCAGATCCTGAGGGCTTCCGTGGAGCTCCT
GGACGAGATGAAGTTCTCACTAGAGAAGCTGCATCAAGGCATCGCCGTCTCAGACCCTCC
CTTCGATTCCCAGCCACAGCCTGACGACAGCTTCTCCTGAGGACACCCGGCCACGAGGCC
ATCCCTCCAAATGGACAGATGGACACAGAGGCTCGGTGGCCACTGCTGGACCGGTGTGAG
CGCCGGGAGCCTCCCACCCACCCCTCCTAGTGGCCCGGCCAGGGGCCACGCAGACACGGG
GACCACAGAACCGAGATGCACTTTAGACCAGCGTGCGCGAGCCCAGCTGCCATCACCTGC
CTCGCCAGGGAGCTGGCCCGGCCTTCGGCAGGCCCCTTGCTAACTTATTTTGCCCGGCTT
GGGTTCGGGGGGATGCCTCCCGGGGTGCACAACTCCCTCAGCTCTGGGTTTAATGTATTA
TATTTATTTGGGGTTAACAGAGCCCCAATAAAGGGTCGCAAGTGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTCTCATCAGCATCGTCCTCATTGTCCTCATCGCCCTCAACGTCCTCCTCTTTTACCG
CCTCTGGTCCCTGGAGAGGACGGCCCACACTTTCGAGTCCTGGCATAGTCTGGCCCTGGC
CAAGGGCAAGTTCCCCCAGACGGCCACGGAGTGGGCGGAGATCCTGGCCCTGCAAAAGCA
GTTCCACAGTGTCGAGGTGCACAAGTGGAGGCAGATCCTGAGGGCTTCCGTGGAGCTCCT
GGACGAGATGAAGTTCTCACTAGAGAAGCTGCATCAAGGCATCGCCGTCTCAGACCCTCC
CTTCGATTCCCAGCCACAGCCTGACGACAGCTTCTCCTGAGGACACCCGGCCACGAGGCC
ATCCCTCCAAATGGACAGATGGACACAGAGGCTCGGTGGCCACTGCTGGACCGGTGTGAG
CGCCGGGAGCCTCCCACCCACCCCTCCTAGTGGCCCGGCCAGGGGCCACGCAGACACGGG
GACCACAGAACCGAGATGCACTTTAGACCAGCGTGCGCGAGCCCAGCTGCCATCACCTGC
CTCGCCAGGGAGCTGGCCCGGCCTTCGGCAGGCCCCTTGCTAACTTATTTTGCCCGGCTT
GGGTTCGGGGGGATGCCTCCCGGGGTGCACAACTCCCTCAGCTCTGGGTTTAATGTATTA
TATTTATTTGGGGTTAACAGAGCCCCAATAAAGGGTCGCAAGTGAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               246-364, - strand, RNAz p=0.707275
               

               
               560-704, + strand, RNAz p=0.994572

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               246-364, - strand, RNAz p=0.707275
               

               
               560-704, + strand, RNAz p=0.994572

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               246-466, - strand, RNAmicro p=0.997222
               

               
               576-685, + strand, RNAmicro p=0.971288
               

               
               253-344, + strand, RNAmicro p=0.910293

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               246-466, - strand, RNAmicro p=0.997222
               

               
               576-685, + strand, RNAmicro p=0.971288
               

               
               253-344, + strand, RNAmicro p=0.910293

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK074914, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK074914, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               19-126, gnl|bosTau2|chr18 (40008093-40007986)
               

               
               19-126, gnl|canFam2|chr1 (120425653-120425514)
               

               
               19-126, gnl|danRer3|chr16 (37827109-37827224)
               

               
               19-126, gnl|dasNov1|scaffold_221369 (3582-3720)
               

               
               19-126, gnl|echTel1|scaffold_295679 (5454-5315)
               

               
               19-126, gnl|fr1|chrUn (246231214-246231329)
               

               
               19-126, gnl|hg17|chr19 (40205962-40206101)
               

               
               19-126, gnl|Hg17|chr19 (40205980-40206087)
               

               
               19-126, gnl|loxAfr1|scaffold_144552 (764-903)
               

               
               19-126, gnl|mm7|chr7 (28075074-28074934)
               

               
               19-126, gnl|Mm7|chr7 (28075055-28074948)
               

               
               19-126, gnl|monDom2|scaffold_139 (1347620-1347762)
               

               
               19-126, gnl|oryCun1|scaffold_172342 (311-451)
               

               
               19-126, gnl|panTro1|chr20 (36791092-36791231)
               

               
               19-126, gnl|rheMac2|chr19 (41513611-41513750)
               

               
               19-126, gnl|rn3|chr1 (86256827-86256687)
               

               
               19-126, gnl|tetNig1|chrUn_random (13651411-13651285)
               

               
               19-126, gnl|xenTro1|scaffold_733 (167268-167111)
               


               
               246-704, gnl|bosTau2|chr18 (40006120-40005674)
               

               
               246-704, gnl|Hg17|chr19 (40208791-40209213)
               

               
               246-704, gnl|Mm7|chr7 (28072776-28072319)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-126, gnl|bosTau2|chr18 (40008093-40007986)
               

               
               19-126, gnl|canFam2|chr1 (120425653-120425514)
               

               
               19-126, gnl|danRer3|chr16 (37827109-37827224)
               

               
               19-126, gnl|dasNov1|scaffold_221369 (3582-3720)
               

               
               19-126, gnl|echTel1|scaffold_295679 (5454-5315)
               

               
               19-126, gnl|fr1|chrUn (246231214-246231329)
               

               
               19-126, gnl|hg17|chr19 (40205962-40206101)
               

               
               19-126, gnl|Hg17|chr19 (40205980-40206087)
               

               
               19-126, gnl|loxAfr1|scaffold_144552 (764-903)
               

               
               19-126, gnl|mm7|chr7 (28075074-28074934)
               

               
               19-126, gnl|Mm7|chr7 (28075055-28074948)
               

               
               19-126, gnl|monDom2|scaffold_139 (1347620-1347762)
               

               
               19-126, gnl|oryCun1|scaffold_172342 (311-451)
               

               
               19-126, gnl|panTro1|chr20 (36791092-36791231)
               

               
               19-126, gnl|rheMac2|chr19 (41513611-41513750)
               

               
               19-126, gnl|rn3|chr1 (86256827-86256687)
               

               
               19-126, gnl|tetNig1|chrUn_random (13651411-13651285)
               

               
               19-126, gnl|xenTro1|scaffold_733 (167268-167111)
               


               
               246-704, gnl|bosTau2|chr18 (40006120-40005674)
               

               
               246-704, gnl|Hg17|chr19 (40208791-40209213)
               

               
               246-704, gnl|Mm7|chr7 (28072776-28072319)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               med (0.116252)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               med (0.116252)

	246-364, - strand, RNAz p=0.707275
	560-704, + strand, RNAz p=0.994572

	246-466, - strand, RNAmicro p=0.997222
	576-685, + strand, RNAmicro p=0.971288
	253-344, + strand, RNAmicro p=0.910293

	19-126, gnl\|bosTau2\|chr18 (40008093-40007986)
	19-126, gnl\|canFam2\|chr1 (120425653-120425514)
	19-126, gnl\|danRer3\|chr16 (37827109-37827224)
	19-126, gnl\|dasNov1\|scaffold_221369 (3582-3720)
	19-126, gnl\|echTel1\|scaffold_295679 (5454-5315)
	19-126, gnl\|fr1\|chrUn (246231214-246231329)
	19-126, gnl\|hg17\|chr19 (40205962-40206101)
	19-126, gnl\|Hg17\|chr19 (40205980-40206087)
	19-126, gnl\|loxAfr1\|scaffold_144552 (764-903)
	19-126, gnl\|mm7\|chr7 (28075074-28074934)
	19-126, gnl\|Mm7\|chr7 (28075055-28074948)
	19-126, gnl\|monDom2\|scaffold_139 (1347620-1347762)
	19-126, gnl\|oryCun1\|scaffold_172342 (311-451)
	19-126, gnl\|panTro1\|chr20 (36791092-36791231)
	19-126, gnl\|rheMac2\|chr19 (41513611-41513750)
	19-126, gnl\|rn3\|chr1 (86256827-86256687)
	19-126, gnl\|tetNig1\|chrUn_random (13651411-13651285)
	19-126, gnl\|xenTro1\|scaffold_733 (167268-167111)

	246-704, gnl\|bosTau2\|chr18 (40006120-40005674)
	246-704, gnl\|Hg17\|chr19 (40208791-40209213)
	246-704, gnl\|Mm7\|chr7 (28072776-28072319)

	ece (0.229305)
	nlu (0.191681)
	fty (0.17584)
	fbs (0.175346)
	csp (0.161186)
	cag (0.151194)
	hyp (0.142837)
	cov (0.132153)
	med (0.116252)