Ss1.1-rnlu1815b_j20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCTGGTCAAGGGTATCTTCGGGAGTCTGATTTAGAAAACTACATATTGGAACTTATCCC TACTTTACCACAGTTAGATGGGCTGGAAAAATCTTTTTACTCCTTTTATGTTTGTACGGC AGTTAGGAAGTTCTTCTTCTTTTTAGACCCTCTACGAACAGGGAAGATAAAAATTCAAGA TATTTTAGCATGCAGCTTCCTAGATGACTTATTGGAGTTAAGGGATGAGGAACTGTCGAA GGAGAGTCAAGAAACAAACTGGTTTTCCGCTCCCTCTGCGCTAAGGGTGTATGGCCAGTA TTTGAATCTTGATAAGGATCACAATGGCATGCTCAGTAAAGAAGAACTCTCCCGCTATGG AACAGCAACCATGACCAATGTCTTCTTAGACCGTGTTTTCCAGGAGTGTCTCACTTATGA TGGAGAAATGGACTATAAGACTTACCTGGATTTTGTTCTTGCATTGGAAAACCGAAAAGA ACCAGCAGCTCTGCAGTATATTTTCAAATTGCTTGACATTGAGAACAAAGGATATCTGAA TGTCTTTTCCCTTAATTATTTCTTTAGGGCCATACAGGAACTAATGAAAATCCATGGACA GGATCCTGTTTCATTTCAAGATGTCAAGGATGAAATCTTTGATATGGTAAAACCAAAGGA TCCTTTGAAGATTTCTCTTCAGGATTTAATCAACAGTAATCAAGGTGACACAGTCACCAC CATTCTAATTGATCTGAATGGCTTTTGGACTTACGAGAATAGGGAAGCCCTTGTTGCAAA TGATAATGAAAATTCTACGGACCTTGATGATACATGATCTCGCAAAGACTAGACTTTATT CATTAAGATAAGTCTGAATGCTACATGTAAAACCTTTGAAGCAGAATCCTTAGAAATGGT CTAAATAAAACAGTTCATATGCCTATAGAATACAGCAAATGTTCTGGTTATTGGAATTTT GGTGGCAGTTGTCTAGAAGCAATGGGACCAAATTACGAGGTCATAAATTCTGATTCTAAG CGCTTAGCTCAAATGTGGCAGGTGTGATTTGGTGAAGAGAGGAGTCCACTTTAAGTCTGT ATAATCTTCAGAAGTAAAAGGAAGTTTTCAGGTAATATTGCTGACATGAGTCATTAAGAA TTTGAATATTGGAAGGATAGTTTAAATTCCACCATTTAACCTTGAATCTTCTTCTAAAGT ATTAGGTATATCAAAGATTATGGACTTTCCCATTCATCAGAGTAAAGCCATTTCATTTCT GGGAAGTGGTTGGATATGATGTTTATTTTAACAGGATGTTTCAATAAAAAGTATTCAAAT TATTAGTATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCTGGTCAAGGGTATCTTCGGGAGTCTGATTTAGAAAACTACATATTGGAACTTATCCC TACTTTACCACAGTTAGATGGGCTGGAAAAATCTTTTTACTCCTTTTATGTTTGTACGGC AGTTAGGAAGTTCTTCTTCTTTTTAGACCCTCTACGAACAGGGAAGATAAAAATTCAAGA TATTTTAGCATGCAGCTTCCTAGATGACTTATTGGAGTTAAGGGATGAGGAACTGTCGAA GGAGAGTCAAGAAACAAACTGGTTTTCCGCTCCCTCTGCGCTAAGGGTGTATGGCCAGTA TTTGAATCTTGATAAGGATCACAATGGCATGCTCAGTAAAGAAGAACTCTCCCGCTATGG AACAGCAACCATGACCAATGTCTTCTTAGACCGTGTTTTCCAGGAGTGTCTCACTTATGA TGGAGAAATGGACTATAAGACTTACCTGGATTTTGTTCTTGCATTGGAAAACCGAAAAGA ACCAGCAGCTCTGCAGTATATTTTCAAATTGCTTGACATTGAGAACAAAGGATATCTGAA TGTCTTTTCCCTTAATTATTTCTTTAGGGCCATACAGGAACTAATGAAAATCCATGGACA GGATCCTGTTTCATTTCAAGATGTCAAGGATGAAATCTTTGATATGGTAAAACCAAAGGA TCCTTTGAAGATTTCTCTTCAGGATTTAATCAACAGTAATCAAGGTGACACAGTCACCAC CATTCTAATTGATCTGAATGGCTTTTGGACTTACGAGAATAGGGAAGCCCTTGTTGCAAA TGATAATGAAAATTCTACGGACCTTGATGATACATGATCTCGCAAAGACTAGACTTTATT CATTAAGATAAGTCTGAATGCTACATGTAAAACCTTTGAAGCAGAATCCTTAGAAATGGT CTAAATAAAACAGTTCATATGCCTATAGAATACAGCAAATGTTCTGGTTATTGGAATTTT GGTGGCAGTTGTCTAGAAGCAATGGGACCAAATTACGAGGTCATAAATTCTGATTCTAAG CGCTTAGCTCAAATGTGGCAGGTGTGATTTGGTGAAGAGAGGAGTCCACTTTAAGTCTGT ATAATCTTCAGAAGTAAAAGGAAGTTTTCAGGTAATATTGCTGACATGAGTCATTAAGAA TTTGAATATTGGAAGGATAGTTTAAATTCCACCATTTAACCTTGAATCTTCTTCTAAAGT ATTAGGTATATCAAAGATTATGGACTTTCCCATTCATCAGAGTAAAGCCATTTCATTTCT GGGAAGTGGTTGGATATGATGTTTATTTTAACAGGATGTTTCAATAAAAAGTATTCAAAT TATTAGTATTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 29-172, gnl|bosTau2|chr21 (29843202-29843059) | |
| 29-172, gnl|Hg17|chr14 (34638341-34638198) | |
| 29-172, gnl|Mm7|chr12 (53119360-53119219) | |
| 293-431, gnl|bosTau2|chr21 (29840327-29840189) | |
| 293-431, gnl|canFam2|chr8 (16876093-16876282) | |
| 293-431, gnl|danRer3|chr17 (6403809-6403964) | |
| 293-431, gnl|echTel1|scaffold_312729 (52789-52603) | |
| 293-431, gnl|fr1|chrUn (158076120-158075950) | |
| 293-431, gnl|galGal2|chr5 (32984774-32984963) | |
| 293-431, gnl|hg17|chr14 (34633969-34634159) | |
| 293-431, gnl|Hg17|chr14 (34634142-34634004) | |
| 293-431, gnl|mm7|chr12 (53213924-53214109) | |
| 293-431, gnl|Mm7|chr12 (53117592-53117454) | |
| 293-431, gnl|monDom2|scaffold_73 (3175639-3175457) | |
| 293-431, gnl|oryCun1|scaffold_187777 (4275-4091) | |
| 293-431, gnl|rheMac2|chr7 (98052682-98052872) | |
| 293-431, gnl|rn3|chr6 (75526508-75526693) | |
| 293-431, gnl|tetNig1|chr10 (2370529-2370685) | |
| 293-431, gnl|xenTro1|scaffold_117 (821212-821021) | |
| 627-1316, gnl|bosTau2|chr21 (29833935-29833254) | |
| 627-1316, gnl|Hg17|chr14 (34624737-34623489) | |
| 627-1316, gnl|Mm7|chr12 (53110637-53109468) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 29-172, gnl|bosTau2|chr21 (29843202-29843059) | |
| 29-172, gnl|Hg17|chr14 (34638341-34638198) | |
| 29-172, gnl|Mm7|chr12 (53119360-53119219) | |
| 293-431, gnl|bosTau2|chr21 (29840327-29840189) | |
| 293-431, gnl|canFam2|chr8 (16876093-16876282) | |
| 293-431, gnl|danRer3|chr17 (6403809-6403964) | |
| 293-431, gnl|echTel1|scaffold_312729 (52789-52603) | |
| 293-431, gnl|fr1|chrUn (158076120-158075950) | |
| 293-431, gnl|galGal2|chr5 (32984774-32984963) | |
| 293-431, gnl|hg17|chr14 (34633969-34634159) | |
| 293-431, gnl|Hg17|chr14 (34634142-34634004) | |
| 293-431, gnl|mm7|chr12 (53213924-53214109) | |
| 293-431, gnl|Mm7|chr12 (53117592-53117454) | |
| 293-431, gnl|monDom2|scaffold_73 (3175639-3175457) | |
| 293-431, gnl|oryCun1|scaffold_187777 (4275-4091) | |
| 293-431, gnl|rheMac2|chr7 (98052682-98052872) | |
| 293-431, gnl|rn3|chr6 (75526508-75526693) | |
| 293-431, gnl|tetNig1|chr10 (2370529-2370685) | |
| 293-431, gnl|xenTro1|scaffold_117 (821212-821021) | |
| 627-1316, gnl|bosTau2|chr21 (29833935-29833254) | |
| 627-1316, gnl|Hg17|chr14 (34624737-34623489) | |
| 627-1316, gnl|Mm7|chr12 (53110637-53109468) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| lin (0.728014) | |
| gul (0.532765) | |
| thg (0.507164) | |
| spl (0.429553) | |
| fat (0.294855) | |
| liv (0.292569) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| bfe (0.149858) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.728014) | |
| gul (0.532765) | |
| thg (0.507164) | |
| spl (0.429553) | |
| fat (0.294855) | |
| liv (0.292569) | |
| cbe (0.239234) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| bfe (0.149858) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| cty (0.10408) |