Non-Coding RNA Search

Ss1.1-rnlu1818b_b20.5

Sequence:


               
               GGAGGACATAGTACCAGCTGAAGCCAGAGCTAGGGGTTTGGCTGAGGTATCTGGGCACAG
GAAGTGCCAGGCCTGGGACCGTCTCTGCTTGGACGTGGCACTGGGCTGGAGCGCACATGG
CATGGTGTCGGGGAGACAGGGCTGCGGCCACACCCAGGGCTGCAGAAGCAGGAACCAGAG
GGCTGGGCAGGCCCCAGCCTGTGCTGGTTGTTGGCGGCAGCCAGTTTGGGCTGCACTTTC
CGTCTTGGTGGTGGTGGTGGTGGTGGGCCGCCCACTAAGGCCAGGCGGAGGCGAGCTGCT
GCCACCTAGTGACCGAGGACTGCAGGGACCCTTAAGAGAAGGTGCTGTAGATCCCCACTC
CCGGCAGGGTTAATGTGCTTGACACCGCCCCCCCCCAATAATCCTCTCAACTTTCCTCAT
CTGCACCCCACCCAGGTTCTTCAGTCTGCCAAGGAACAAATTAAGTGGTCCTTACTGAAA
TGAAGGCGTGCATTCAAGTCTCCCTGCCCCCAGCCCATTCCCACAATCCTGGCAAAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGACATAGTACCAGCTGAAGCCAGAGCTAGGGGTTTGGCTGAGGTATCTGGGCACAG
GAAGTGCCAGGCCTGGGACCGTCTCTGCTTGGACGTGGCACTGGGCTGGAGCGCACATGG
CATGGTGTCGGGGAGACAGGGCTGCGGCCACACCCAGGGCTGCAGAAGCAGGAACCAGAG
GGCTGGGCAGGCCCCAGCCTGTGCTGGTTGTTGGCGGCAGCCAGTTTGGGCTGCACTTTC
CGTCTTGGTGGTGGTGGTGGTGGTGGGCCGCCCACTAAGGCCAGGCGGAGGCGAGCTGCT
GCCACCTAGTGACCGAGGACTGCAGGGACCCTTAAGAGAAGGTGCTGTAGATCCCCACTC
CCGGCAGGGTTAATGTGCTTGACACCGCCCCCCCCCAATAATCCTCTCAACTTTCCTCAT
CTGCACCCCACCCAGGTTCTTCAGTCTGCCAAGGAACAAATTAAGTGGTCCTTACTGAAA
TGAAGGCGTGCATTCAAGTCTCCCTGCCCCCAGCCCATTCCCACAATCCTGGCAAAAGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               111-303, + strand, RNAz p=0.971475

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-303, + strand, RNAz p=0.971475

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               192-263, + strand, RNAmicro p=0.999106

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               192-263, + strand, RNAmicro p=0.999106

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-540, gnl|bosTau2|chr19 (31121421-31121934)
               

               
               2-540, gnl|Hg17|chr17 (43459249-43458734)
               

               
               2-540, gnl|Mm7|chr11 (96969538-96970006)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-540, gnl|bosTau2|chr19 (31121421-31121934)
               

               
               2-540, gnl|Hg17|chr17 (43459249-43458734)
               

               
               2-540, gnl|Mm7|chr11 (96969538-96970006)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               cki (0.165235)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cki (0.165235)
               

               
               ese (0.126502)

	2-540, gnl\|bosTau2\|chr19 (31121421-31121934)
	2-540, gnl\|Hg17\|chr17 (43459249-43458734)
	2-540, gnl\|Mm7\|chr11 (96969538-96970006)