Non-Coding RNA Search

Ss1.1-rnlu1820b_a10.5

Sequence:


               
               TGCATACACACACACACACACACACACACACACACACACACACACGTATGTATACACACA
CATATACACACATATGTTTATATATTATTCCTTTCTTTGTGTGACATAATGTATTTGATA
GAAATTTAGTTAATCCTTACCCAGTGGTAAAAGTGTTACTTGAGTATAAAGACTTTTGCT
ATAAGTATCAATTTACACTGGCTAAAGTTTTTTTGCTAATAATGTGTTTCATTGGGGTCT
TATTAATTAAGATCTTAAGTCATTGAAGTATTAGAAATTTAAAGTGATTTAGGCCAGAAT
GACCATCTAGAAGGTATTGTTTCACCTAGTCTTCTCACAAATAAATAAGCTTCTTTTTGC
TTTATTTCATAACAGATATTGATACCTCAGATTCAGGGGCATCAGGAAAGCTTCTTCATT
TATAGACATACATTCAAAAATATTGATTTAATATGATGTAATTTGTGCTAGGAGAGGTTT
TTTTATATGGCCTGCTTATGCAAATTGATTGACAGAATTCCTTANATTTTTATAATAGTA
TTTTTAATACTTTTAATATGTATATGTCTAATTATTATATAAGCTTTTTTTTTTCTTCAA
AAACATTTTCTCTAGTGTAAAATACCTCCATTTGTACATGTGATAAATAGTGGTGGTGAT
TGTATTAAGTTGACATTATATGTGAATTGTGAGCCTGTTCAAGGCACTGCCAAATATGTG
TGGTAAGAGCCATGTTATTGCATGCTGCATGAATTCCCAATGTGAATGGAAGAACACCCG
TTGTTGTATGTATTTTCTCTAACTCCCATCAGGGTCTCACTGTGCGGGCCTGTTTAGCAC
CTCGGTGCTCGGGGGTTCTTCAAGCGCACCTAACCTACAGGATTATGCTCGTACTCATCG
TAAAGAGCTGACCTCTTCTGGCTGCATAGATGGTATGTGCACACATGCACACACAGATTC
ATACCTACACCCATGCACACACCCATGAGCATATTTCTCAAAGGCAAGCCTAAGGCTACT
GACTGATGCAAATGGAATCCTTTGCCTAAGTGAACTCTCAGTGCTCTGTTACCCACTACT
TGGGTCCATGTTTCATCAAACAGTTAATTATAGTTAGACTTACAGTACTTGTTCAATGAG
TATTTTGTTGTAATGTGAAATTTAAAGCTGCATTATGTATACTCTTCTTTTAGGTAGTTA
ATAAGCCACATTATAAAGAATAAATCTTCCTTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCATACACACACACACACACACACACACACACACACACACACACGTATGTATACACACA
CATATACACACATATGTTTATATATTATTCCTTTCTTTGTGTGACATAATGTATTTGATA
GAAATTTAGTTAATCCTTACCCAGTGGTAAAAGTGTTACTTGAGTATAAAGACTTTTGCT
ATAAGTATCAATTTACACTGGCTAAAGTTTTTTTGCTAATAATGTGTTTCATTGGGGTCT
TATTAATTAAGATCTTAAGTCATTGAAGTATTAGAAATTTAAAGTGATTTAGGCCAGAAT
GACCATCTAGAAGGTATTGTTTCACCTAGTCTTCTCACAAATAAATAAGCTTCTTTTTGC
TTTATTTCATAACAGATATTGATACCTCAGATTCAGGGGCATCAGGAAAGCTTCTTCATT
TATAGACATACATTCAAAAATATTGATTTAATATGATGTAATTTGTGCTAGGAGAGGTTT
TTTTATATGGCCTGCTTATGCAAATTGATTGACAGAATTCCTTANATTTTTATAATAGTA
TTTTTAATACTTTTAATATGTATATGTCTAATTATTATATAAGCTTTTTTTTTTCTTCAA
AAACATTTTCTCTAGTGTAAAATACCTCCATTTGTACATGTGATAAATAGTGGTGGTGAT
TGTATTAAGTTGACATTATATGTGAATTGTGAGCCTGTTCAAGGCACTGCCAAATATGTG
TGGTAAGAGCCATGTTATTGCATGCTGCATGAATTCCCAATGTGAATGGAAGAACACCCG
TTGTTGTATGTATTTTCTCTAACTCCCATCAGGGTCTCACTGTGCGGGCCTGTTTAGCAC
CTCGGTGCTCGGGGGTTCTTCAAGCGCACCTAACCTACAGGATTATGCTCGTACTCATCG
TAAAGAGCTGACCTCTTCTGGCTGCATAGATGGTATGTGCACACATGCACACACAGATTC
ATACCTACACCCATGCACACACCCATGAGCATATTTCTCAAAGGCAAGCCTAAGGCTACT
GACTGATGCAAATGGAATCCTTTGCCTAAGTGAACTCTCAGTGCTCTGTTACCCACTACT
TGGGTCCATGTTTCATCAAACAGTTAATTATAGTTAGACTTACAGTACTTGTTCAATGAG
TATTTTGTTGTAATGTGAAATTTAAAGCTGCATTATGTATACTCTTCTTTTAGGTAGTTA
ATAAGCCACATTATAAAGAATAAATCTTCCTTTGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               869-1026, - strand, RNAz p=0.991722

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               869-1026, - strand, RNAz p=0.991722

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               52-186, gnl|bosTau2|chr7 (64972931-64973061)
               

               
               52-186, gnl|canFam2|chr3 (10912569-10912368)
               

               
               52-186, gnl|dasNov1|scaffold_5851 (52049-52276)
               

               
               52-186, gnl|echTel1|scaffold_323594 (264458-264686)
               

               
               52-186, gnl|galGal2|chrZ (22486033-22486299)
               

               
               52-186, gnl|hg17|chr5 (102549066-102549296)
               

               
               52-186, gnl|Hg17|chr5 (102549132-102549251)
               

               
               52-186, gnl|loxAfr1|scaffold_18081 (56368-56138)
               

               
               52-186, gnl|mm7|chr1 (97570643-97570414)
               

               
               52-186, gnl|Mm7|chr1 (97570577-97570459)
               

               
               52-186, gnl|panTro1|chr4 (108388002-108388232)
               

               
               52-186, gnl|rheMac2|chr6 (99427920-99428154)
               

               
               52-186, gnl|rn3|chr9 (97372718-97372945)
               


               
               231-1225, gnl|bosTau2|chr7 (64973072-64974087)
               

               
               231-1225, gnl|Hg17|chr5 (102549299-102550337)
               

               
               231-1225, gnl|Mm7|chr1 (97570443-97569349)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-186, gnl|bosTau2|chr7 (64972931-64973061)
               

               
               52-186, gnl|canFam2|chr3 (10912569-10912368)
               

               
               52-186, gnl|dasNov1|scaffold_5851 (52049-52276)
               

               
               52-186, gnl|echTel1|scaffold_323594 (264458-264686)
               

               
               52-186, gnl|galGal2|chrZ (22486033-22486299)
               

               
               52-186, gnl|hg17|chr5 (102549066-102549296)
               

               
               52-186, gnl|Hg17|chr5 (102549132-102549251)
               

               
               52-186, gnl|loxAfr1|scaffold_18081 (56368-56138)
               

               
               52-186, gnl|mm7|chr1 (97570643-97570414)
               

               
               52-186, gnl|Mm7|chr1 (97570577-97570459)
               

               
               52-186, gnl|panTro1|chr4 (108388002-108388232)
               

               
               52-186, gnl|rheMac2|chr6 (99427920-99428154)
               

               
               52-186, gnl|rn3|chr9 (97372718-97372945)
               


               
               231-1225, gnl|bosTau2|chr7 (64973072-64974087)
               

               
               231-1225, gnl|Hg17|chr5 (102549299-102550337)
               

               
               231-1225, gnl|Mm7|chr1 (97570443-97569349)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	52-186, gnl\|bosTau2\|chr7 (64972931-64973061)
	52-186, gnl\|canFam2\|chr3 (10912569-10912368)
	52-186, gnl\|dasNov1\|scaffold_5851 (52049-52276)
	52-186, gnl\|echTel1\|scaffold_323594 (264458-264686)
	52-186, gnl\|galGal2\|chrZ (22486033-22486299)
	52-186, gnl\|hg17\|chr5 (102549066-102549296)
	52-186, gnl\|Hg17\|chr5 (102549132-102549251)
	52-186, gnl\|loxAfr1\|scaffold_18081 (56368-56138)
	52-186, gnl\|mm7\|chr1 (97570643-97570414)
	52-186, gnl\|Mm7\|chr1 (97570577-97570459)
	52-186, gnl\|panTro1\|chr4 (108388002-108388232)
	52-186, gnl\|rheMac2\|chr6 (99427920-99428154)
	52-186, gnl\|rn3\|chr9 (97372718-97372945)

	231-1225, gnl\|bosTau2\|chr7 (64973072-64974087)
	231-1225, gnl\|Hg17\|chr5 (102549299-102550337)
	231-1225, gnl\|Mm7\|chr1 (97570443-97569349)