Non-Coding RNA Search

Ss1.1-rnlu1823b_c22.5

Sequence:


               
               CTCTGAACCTCCGCTGACGCTAAAGCTTTCGGCTGCTGTTCTCCCTTACCCAGCCCTCTG
TGGCTGGGTACGGCAGCGCTCTGAGGACAAAAATCTTCCCTCCTCCGTGGGCTCTGCTTT
GCGCTAGTTTCTTGGGCGAATGTGAGGCTGAAAGTATTAGGGTCTCCACTCAGCTGCTAC
AGAGAGGTAGGAGGAGCCTGCGCCTGGCGCGGAGTTCGGGCTAACTGGGGCCTGGGCCCG
GCGAGACGCCGTCGTTGCCCGGATGTTGCGCTGGCTGATCGGGGGAGGCCGAGAACCTCA
GGGACTGGCCGAGAAATCTTCTTTACAGACAATAGGTGAGGAACAAACCCAGAATCCCTA
CACTGAACTGCTTGTGCTGAAAGCTCATCATGATATTGTACGATTTCTTGTACAGTTAGA
TGACTATAGTGTTTAGCTGTTCTTCAGAGACTAGATGTTTGGCTCTCTGGTGGGAATGAC
TTGTGTGTATGGAACCGAAATTTAGATCTCCTGTGTAAGACTGGTCACCTTTCTGATACA
GGGATCAGTGCTTTGATTGAAATACCTAAGAACTGTGTAGTGGCCGCAGTTGGCAAAGAA
CTGATAATTTTCAGGTTGGTAGCACCCTCAGAGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGAACCTCCGCTGACGCTAAAGCTTTCGGCTGCTGTTCTCCCTTACCCAGCCCTCTG
TGGCTGGGTACGGCAGCGCTCTGAGGACAAAAATCTTCCCTCCTCCGTGGGCTCTGCTTT
GCGCTAGTTTCTTGGGCGAATGTGAGGCTGAAAGTATTAGGGTCTCCACTCAGCTGCTAC
AGAGAGGTAGGAGGAGCCTGCGCCTGGCGCGGAGTTCGGGCTAACTGGGGCCTGGGCCCG
GCGAGACGCCGTCGTTGCCCGGATGTTGCGCTGGCTGATCGGGGGAGGCCGAGAACCTCA
GGGACTGGCCGAGAAATCTTCTTTACAGACAATAGGTGAGGAACAAACCCAGAATCCCTA
CACTGAACTGCTTGTGCTGAAAGCTCATCATGATATTGTACGATTTCTTGTACAGTTAGA
TGACTATAGTGTTTAGCTGTTCTTCAGAGACTAGATGTTTGGCTCTCTGGTGGGAATGAC
TTGTGTGTATGGAACCGAAATTTAGATCTCCTGTGTAAGACTGGTCACCTTTCTGATACA
GGGATCAGTGCTTTGATTGAAATACCTAAGAACTGTGTAGTGGCCGCAGTTGGCAAAGAA
CTGATAATTTTCAGGTTGGTAGCACCCTCAGAGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47183823|emb|CAF87284.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47183823|emb|CAF87284.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-313, gnl|bosTau2|chr10 (2520886-2520562)
               

               
               1-313, gnl|Hg17|chr5 (76824070-76823751)
               


               
               425-542, gnl|bosTau2|chr10 (2494700-2494583)
               

               
               425-542, gnl|Hg17|chr5 (76785514-76785397)
               

               
               425-542, gnl|Mm7|chr13 (92068772-92068889)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-313, gnl|bosTau2|chr10 (2520886-2520562)
               

               
               1-313, gnl|Hg17|chr5 (76824070-76823751)
               


               
               425-542, gnl|bosTau2|chr10 (2494700-2494583)
               

               
               425-542, gnl|Hg17|chr5 (76785514-76785397)
               

               
               425-542, gnl|Mm7|chr13 (92068772-92068889)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.383362)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               eep (0.122564)

	1-313, gnl\|bosTau2\|chr10 (2520886-2520562)
	1-313, gnl\|Hg17\|chr5 (76824070-76823751)

	425-542, gnl\|bosTau2\|chr10 (2494700-2494583)
	425-542, gnl\|Hg17\|chr5 (76785514-76785397)
	425-542, gnl\|Mm7\|chr13 (92068772-92068889)