Non-Coding RNA Search

Ss1.1-rnlu1826b_e22.5

Sequence:


               
               ACCCAGGAACTAAGAAGGAAGGAGGTTTTCAGTTCAGTCACATTAAAGGCCCTGGGGGAA
AGTAAGGCTCAGAGCAGGAAGGAGTAAAGAAACATTGTCTTTTTGTTTTATTTGGTTGGA
GTTTCTCATGTTTGAAAACACTGCAGTATCCATAAGTTGGCCTTGTGGAGGGTGTTTTTA
GGTAGAGGTGAGAATGGAAGGCAAGCTCTTGGGCACCATGTGGGAGTCTTGTTGTTAGCT
AACTGGGCAGAGGTGGAAGAGGTGGAGATGCAGTGTCGTCCGTGGCTCTGGAACTCTTCC
CAGGCCTACTTTCCCCTCACCCAGCCACTTAGGTAGCGTCTCTCCCATAATGGGAGAGGT
TCTGGACTCCAGAGTCCTCCAAAGAATCTTCACTGGTTGCCTGCATCTTTGGCTCTGCTG
TGATCTAAATGGAGGAGGGACCAGTTTCTGACACCCATCCTCTGACTTATACATATGCAT
TTTTTTTTTTTTTCCTCTCTCGTCTTCAGATGGCCTCAGCCCCAGCCACTATATCCCCTG
CAGTTTGCACTTTAATTGATGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCAGGAACTAAGAAGGAAGGAGGTTTTCAGTTCAGTCACATTAAAGGCCCTGGGGGAA
AGTAAGGCTCAGAGCAGGAAGGAGTAAAGAAACATTGTCTTTTTGTTTTATTTGGTTGGA
GTTTCTCATGTTTGAAAACACTGCAGTATCCATAAGTTGGCCTTGTGGAGGGTGTTTTTA
GGTAGAGGTGAGAATGGAAGGCAAGCTCTTGGGCACCATGTGGGAGTCTTGTTGTTAGCT
AACTGGGCAGAGGTGGAAGAGGTGGAGATGCAGTGTCGTCCGTGGCTCTGGAACTCTTCC
CAGGCCTACTTTCCCCTCACCCAGCCACTTAGGTAGCGTCTCTCCCATAATGGGAGAGGT
TCTGGACTCCAGAGTCCTCCAAAGAATCTTCACTGGTTGCCTGCATCTTTGGCTCTGCTG
TGATCTAAATGGAGGAGGGACCAGTTTCTGACACCCATCCTCTGACTTATACATATGCAT
TTTTTTTTTTTTTCCTCTCTCGTCTTCAGATGGCCTCAGCCCCAGCCACTATATCCCCTG
CAGTTTGCACTTTAATTGATGGTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               239-398, - strand, RNAz p=0.982736
               

               
               247-526, - strand, RNAz p=0.985327

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-398, - strand, RNAz p=0.982736
               

               
               247-526, - strand, RNAz p=0.985327

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               242-398, 4127683 BARC 8BOV Bos taurus cDNA clone 8BOV_46C11 5', mRNA 
(gb|CN792765.1|), blast E-value=4e-39, identity=88.54% 
               

               
               242-398, BovGen_11210 normal cattle brain Bos taurus cDNA clone 
(gb|CO882885.1|), blast E-value=4e-39, identity=88.54% 
               

               
               242-398, LB02535.CR_F12 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE340988.1|), 
blast E-value=4e-39, identity=88.54% 
               

               
               242-398, LB02550.CR_E22 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE345183.1|), 
blast E-value=4e-39, identity=88.54% 
               

               
               242-398, LB03034.CR_L02 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE372611.1|), 
blast E-value=4e-39, identity=88.54% 
               

               
               242-398, LB03061.CR_O13 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE380843.1|), 
blast E-value=4e-39, identity=88.54%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               242-398, 4127683 BARC 8BOV Bos taurus cDNA clone 8BOV_46C11 5', mRNA 
(gb|CN792765.1|), blast E-value=4e-39, identity=88.54% 
               

               
               242-398, BovGen_11210 normal cattle brain Bos taurus cDNA clone 
(gb|CO882885.1|), blast E-value=4e-39, identity=88.54% 
               

               
               242-398, LB02535.CR_F12 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE340988.1|), 
blast E-value=4e-39, identity=88.54% 
               

               
               242-398, LB02550.CR_E22 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE345183.1|), 
blast E-value=4e-39, identity=88.54% 
               

               
               242-398, LB03034.CR_L02 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE372611.1|), 
blast E-value=4e-39, identity=88.54% 
               

               
               242-398, LB03061.CR_O13 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE380843.1|), 
blast E-value=4e-39, identity=88.54%

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               18-564, gnl|bosTau2|chr5 (33618958-33618424)
               

               
               18-564, gnl|Hg17|chr12 (54672714-54673244)
               

               
               18-564, gnl|Mm7|chr10 (128180865-128180344)
               


               
               199-474, gnl|bosTau2|chr29 (7806202-7805927)
               

               
               199-474, gnl|Hg17|chr5 (6585815-6585560)
               

               
               199-474, gnl|Mm7|chr2 (116268069-116267834)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-564, gnl|bosTau2|chr5 (33618958-33618424)
               

               
               18-564, gnl|Hg17|chr12 (54672714-54673244)
               

               
               18-564, gnl|Mm7|chr10 (128180865-128180344)
               


               
               199-474, gnl|bosTau2|chr29 (7806202-7805927)
               

               
               199-474, gnl|Hg17|chr5 (6585815-6585560)
               

               
               199-474, gnl|Mm7|chr2 (116268069-116267834)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cov (0.132153)

	239-398, - strand, RNAz p=0.982736
	247-526, - strand, RNAz p=0.985327

	242-398, 4127683 BARC 8BOV Bos taurus cDNA clone 8BOV_46C11 5', mRNA (gb\|CN792765.1\|), blast E-value=4e-39, identity=88.54%
	242-398, BovGen_11210 normal cattle brain Bos taurus cDNA clone (gb\|CO882885.1\|), blast E-value=4e-39, identity=88.54%
	242-398, LB02535.CR_F12 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE340988.1\|), blast E-value=4e-39, identity=88.54%
	242-398, LB02550.CR_E22 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE345183.1\|), blast E-value=4e-39, identity=88.54%
	242-398, LB03034.CR_L02 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE372611.1\|), blast E-value=4e-39, identity=88.54%
	242-398, LB03061.CR_O13 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE380843.1\|), blast E-value=4e-39, identity=88.54%

	18-564, gnl\|bosTau2\|chr5 (33618958-33618424)
	18-564, gnl\|Hg17\|chr12 (54672714-54673244)
	18-564, gnl\|Mm7\|chr10 (128180865-128180344)

	199-474, gnl\|bosTau2\|chr29 (7806202-7805927)
	199-474, gnl\|Hg17\|chr5 (6585815-6585560)
	199-474, gnl\|Mm7\|chr2 (116268069-116267834)