Ss1.1-rnlu1830b_g11.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GACCCTGGTCACACTTGGGGATGAGCAGGGGAAGGTGCCTACAGCAAGATGGATGTAGGC AGCAAAGAAGTCCTGATGGAGAGCCCGCCGGACTACTCAGCAGTCCCAGGGGGCCGGCTC CGCATCCCCTGCTGTCCTGTGAACCTCAAACGCCTTCTTGTCGTGGTCGTGGTGGTGGTT CTTGTCGTCGTGGTGATTGTAGGGGCCCTGCTCATGGGTCTTCACATGAGCCAGAAACAT ACTGAGATGGTCCTAGAGATGAGCCTCGCAGGGCCAGAAGCCCAGCAACGCCTGGCCCTG AGTGAGCATGTGGGAACCACTGCCACCTTCTCCATTGGCTCTAGTGGCAATGTGGTCTAT GACTACCAGCGGCTCCTGATTGCCTACAAGCCAGCCCCGGGAACCTGCTGCTATGTCATG AAGATGTCTCCGCAGAGTATGCCGAGTCTTGAGGCTCTCACCAAAAAATTCCAGAACTTC CAGGCCAAGCCCTCGACGCCTACCTCTAAGCTGGGCCAGGAGGAGGGCTGTGTCGCTGGC TCAGCACCCTCCGGGGACCTGGCCTTCCTGGGCAGCACCATGAGCACCCTGTGTGGCGAA GTGCCCCTCTTGTACATCTAGGAAACATCAGGGCCTCAGGAAGCCCCAAGAGGACAGCAA AGATCCAGGAGCAAAGAGTCTTGTGCAGACTCACAGGAAGCCGCTTCTGGGACACCACGG GGACTGGCCCTGGAGAAATGGGAGCTGTGGGGAGAGGTGGGCAGAGGAGAAGCAGCTGTT AGGGGCCCGGGGGCTTCTACCACCAAAGAATAAAGC |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GACCCTGGTCACACTTGGGGATGAGCAGGGGAAGGTGCCTACAGCAAGATGGATGTAGGC AGCAAAGAAGTCCTGATGGAGAGCCCGCCGGACTACTCAGCAGTCCCAGGGGGCCGGCTC CGCATCCCCTGCTGTCCTGTGAACCTCAAACGCCTTCTTGTCGTGGTCGTGGTGGTGGTT CTTGTCGTCGTGGTGATTGTAGGGGCCCTGCTCATGGGTCTTCACATGAGCCAGAAACAT ACTGAGATGGTCCTAGAGATGAGCCTCGCAGGGCCAGAAGCCCAGCAACGCCTGGCCCTG AGTGAGCATGTGGGAACCACTGCCACCTTCTCCATTGGCTCTAGTGGCAATGTGGTCTAT GACTACCAGCGGCTCCTGATTGCCTACAAGCCAGCCCCGGGAACCTGCTGCTATGTCATG AAGATGTCTCCGCAGAGTATGCCGAGTCTTGAGGCTCTCACCAAAAAATTCCAGAACTTC CAGGCCAAGCCCTCGACGCCTACCTCTAAGCTGGGCCAGGAGGAGGGCTGTGTCGCTGGC TCAGCACCCTCCGGGGACCTGGCCTTCCTGGGCAGCACCATGAGCACCCTGTGTGGCGAA GTGCCCCTCTTGTACATCTAGGAAACATCAGGGCCTCAGGAAGCCCCAAGAGGACAGCAA AGATCCAGGAGCAAAGAGTCTTGTGCAGACTCACAGGAAGCCGCTTCTGGGACACCACGG GGACTGGCCCTGGAGAAATGGGAGCTGTGGGGAGAGGTGGGCAGAGGAGAAGCAGCTGTT AGGGGCCCGGGGGCTTCTACCACCAAAGAATAAAGC |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
629-737, + strand, RNAz p=0.998921 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
629-737, + strand, RNAz p=0.998921 |
Homologous human UTR: 1 entry(ies) | More info |
Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
3' of NM_003018, + |
Aligned organism(s): 39 entry(ies) | More info |
Aligned organism(s): 39 entry(ies) | Help | Less info |
90-251, gnl|bosTau2|chr8 (31420449-31420288) | |
90-251, gnl|canFam2|chr25 (38079413-38078942) | |
90-251, gnl|hg17|chr8 (22075997-22076463) | |
90-251, gnl|Hg17|chr8 (22076031-22076192) | |
90-251, gnl|loxAfr1|scaffold_16625 (6116-5680) | |
90-251, gnl|mm7|chr14 (65167294-65166840) | |
90-251, gnl|Mm7|chr14 (65167258-65167097) | |
90-251, gnl|monDom2|scaffold_1 (73417385-73416944) | |
90-251, gnl|oryCun1|scaffold_171762 (5634-5235) | |
90-251, gnl|panTro1|chr7 (23008627-23009093) | |
90-251, gnl|rheMac2|chr8 (22085868-22086334) | |
90-251, gnl|rn3|chr15 (50940681-50940311) | |
372-484, gnl|bosTau2|chr8 (31419340-31419228) | |
372-484, gnl|canFam2|chr25 (38078941-38078397) | |
372-484, gnl|echTel1|scaffold_283375 (11318-11833) | |
372-484, gnl|hg17|chr8 (22076464-22076984) | |
372-484, gnl|Hg17|chr8 (22076893-22077005) | |
372-484, gnl|loxAfr1|scaffold_16625 (5679-5177) | |
372-484, gnl|mm7|chr14 (65166839-65166311) | |
372-484, gnl|Mm7|chr14 (65166400-65166288) | |
372-484, gnl|monDom2|scaffold_1 (73416943-73416265) | |
372-484, gnl|oryCun1|scaffold_171762 (5234-4753) | |
372-484, gnl|panTro1|chr7 (23009094-23009614) | |
372-484, gnl|rheMac2|chr8 (22086335-22086854) | |
372-484, gnl|rn3|chr15 (50940310-50939797) | |
629-816, gnl|bosTau2|chr8 (31418540-31418352) | |
629-816, gnl|canFam2|chr25 (38077708-38077568) | |
629-816, gnl|dasNov1|scaffold_51744 (598-465) | |
629-816, gnl|echTel1|scaffold_283375 (12481-12591) | |
629-816, gnl|hg17|chr8 (22077709-22077858) | |
629-816, gnl|Hg17|chr8 (22077721-22077918) | |
629-816, gnl|loxAfr1|scaffold_16625 (4488-4346) | |
629-816, gnl|mm7|chr14 (65165616-65165498) | |
629-816, gnl|Mm7|chr14 (65165602-65165444) | |
629-816, gnl|monDom2|scaffold_1 (73415567-73415451) | |
629-816, gnl|oryCun1|scaffold_171762 (4217-4072) | |
629-816, gnl|panTro1|chr7 (23010339-23010488) | |
629-816, gnl|rheMac2|chr8 (22087566-22087715) | |
629-816, gnl|rn3|chr15 (50939077-50938952) |
Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
90-251, gnl|bosTau2|chr8 (31420449-31420288) | |
90-251, gnl|canFam2|chr25 (38079413-38078942) | |
90-251, gnl|hg17|chr8 (22075997-22076463) | |
90-251, gnl|Hg17|chr8 (22076031-22076192) | |
90-251, gnl|loxAfr1|scaffold_16625 (6116-5680) | |
90-251, gnl|mm7|chr14 (65167294-65166840) | |
90-251, gnl|Mm7|chr14 (65167258-65167097) | |
90-251, gnl|monDom2|scaffold_1 (73417385-73416944) | |
90-251, gnl|oryCun1|scaffold_171762 (5634-5235) | |
90-251, gnl|panTro1|chr7 (23008627-23009093) | |
90-251, gnl|rheMac2|chr8 (22085868-22086334) | |
90-251, gnl|rn3|chr15 (50940681-50940311) | |
372-484, gnl|bosTau2|chr8 (31419340-31419228) | |
372-484, gnl|canFam2|chr25 (38078941-38078397) | |
372-484, gnl|echTel1|scaffold_283375 (11318-11833) | |
372-484, gnl|hg17|chr8 (22076464-22076984) | |
372-484, gnl|Hg17|chr8 (22076893-22077005) | |
372-484, gnl|loxAfr1|scaffold_16625 (5679-5177) | |
372-484, gnl|mm7|chr14 (65166839-65166311) | |
372-484, gnl|Mm7|chr14 (65166400-65166288) | |
372-484, gnl|monDom2|scaffold_1 (73416943-73416265) | |
372-484, gnl|oryCun1|scaffold_171762 (5234-4753) | |
372-484, gnl|panTro1|chr7 (23009094-23009614) | |
372-484, gnl|rheMac2|chr8 (22086335-22086854) | |
372-484, gnl|rn3|chr15 (50940310-50939797) | |
629-816, gnl|bosTau2|chr8 (31418540-31418352) | |
629-816, gnl|canFam2|chr25 (38077708-38077568) | |
629-816, gnl|dasNov1|scaffold_51744 (598-465) | |
629-816, gnl|echTel1|scaffold_283375 (12481-12591) | |
629-816, gnl|hg17|chr8 (22077709-22077858) | |
629-816, gnl|Hg17|chr8 (22077721-22077918) | |
629-816, gnl|loxAfr1|scaffold_16625 (4488-4346) | |
629-816, gnl|mm7|chr14 (65165616-65165498) | |
629-816, gnl|Mm7|chr14 (65165602-65165444) | |
629-816, gnl|monDom2|scaffold_1 (73415567-73415451) | |
629-816, gnl|oryCun1|scaffold_171762 (4217-4072) | |
629-816, gnl|panTro1|chr7 (23010339-23010488) | |
629-816, gnl|rheMac2|chr8 (22087566-22087715) | |
629-816, gnl|rn3|chr15 (50939077-50938952) |
Expressed library(ies): 5 entry(ies) | More info |
Expressed library(ies): 5 entry(ies) | Help | Less info |
nlu (24.9185) | |
elu (1.15607) | |
clu (0.717875) | |
cte (0.29274) | |
ese (0.126502) |
Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
nlu (24.9185) | |
elu (1.15607) | |
clu (0.717875) | |
cte (0.29274) | |
ese (0.126502) |