Ss1.1-rnlu1830b_m1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTCCTGATTTGCATGAAGAGTAGCACTTGTCTATAGACCCAAGGCCCAGTGATGTGT GTGGGGTTTTTAGCAGCACCAAACTCTGATTTCAGAAGGCCTCGGGGTTTATGATTTTGC TGTGGCCTCCTACCTTTACCTCTTGCCTTCTATCAGCTGCCTTGTATGATTTGGTTACTG AAGGGACTATCAGGCAGATGCTCTGTGGTATATTTGGTGTATTTTGCCAATTATTGTCAT CTCTTGAGATTCTGATCTATAAGAGAATGAGAAGCCCTGTGGATGCTTTACTATAGTGAA ACACAGGATCACGACACCTGAGATTGTCAGTCCAGCCAATGAGACGATGGAAGTGATCTT GGGATCTCAGCTCCAATTGATCTGCAATGTGACTGGCCGGGTGAGTGACTTTGTCTACTG GAAGTGGAATGGATCAATAGTTGATGAAAAAGACCCAGTGCTGAAGGAAGATTTCACACA AACTGGAGAATCCTTTAAACAAAAGAAGGAGTACAGTCCTCGCAACACTTAATATTTCAG TAGTCGAAAGTAAATTTTTTCTACATCCATTCATCTGTTTAGCCAAGAATACGTATGGAA CGAGGACAGCATATATCCAATTAATACATCCAGTCCCTGATTTCCACAAGCCCATGATTG GTATACTTGTCATGGTAACACTGCTAATTACATGCTCTGTTTTCATCTATAAAGTCTTCA AGATTGACATTGTGCTCTTGTACAGAGAGACCTGCTATGATTTTCTCCCGAAAAAAGCTT CAGATGGAAAGACATATGATGCATACATACTATGTCCAAAGACCCCTGGTGACGGGTCCA CCTCTAACTCAGATATTTTTGTGTTTAAAGTCTTGCCTGAGGTCTTGGAAAAACAGTGTG GATATAAGCTGTTTATCTGTGGCAGGGACGACTACGTTGGGGAAAGCATTGCTGAGGTTA CTAATGAAAACATAAAGAAAAGCAGAAGACTGATTGTGATTTTGGTCCGAGAAACATCAG AATTCAGGTGGCTGGGGAATTCATCTCAAGAGCAGATAGCTATGTACAATGCTCTCATTC AGGAAGGAATTAAAGTTGTCCTGCTGGAGCTGGAGAATATCCAAGACTATGAGAAAATGC CAGAATCCATAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTCCTGATTTGCATGAAGAGTAGCACTTGTCTATAGACCCAAGGCCCAGTGATGTGT GTGGGGTTTTTAGCAGCACCAAACTCTGATTTCAGAAGGCCTCGGGGTTTATGATTTTGC TGTGGCCTCCTACCTTTACCTCTTGCCTTCTATCAGCTGCCTTGTATGATTTGGTTACTG AAGGGACTATCAGGCAGATGCTCTGTGGTATATTTGGTGTATTTTGCCAATTATTGTCAT CTCTTGAGATTCTGATCTATAAGAGAATGAGAAGCCCTGTGGATGCTTTACTATAGTGAA ACACAGGATCACGACACCTGAGATTGTCAGTCCAGCCAATGAGACGATGGAAGTGATCTT GGGATCTCAGCTCCAATTGATCTGCAATGTGACTGGCCGGGTGAGTGACTTTGTCTACTG GAAGTGGAATGGATCAATAGTTGATGAAAAAGACCCAGTGCTGAAGGAAGATTTCACACA AACTGGAGAATCCTTTAAACAAAAGAAGGAGTACAGTCCTCGCAACACTTAATATTTCAG TAGTCGAAAGTAAATTTTTTCTACATCCATTCATCTGTTTAGCCAAGAATACGTATGGAA CGAGGACAGCATATATCCAATTAATACATCCAGTCCCTGATTTCCACAAGCCCATGATTG GTATACTTGTCATGGTAACACTGCTAATTACATGCTCTGTTTTCATCTATAAAGTCTTCA AGATTGACATTGTGCTCTTGTACAGAGAGACCTGCTATGATTTTCTCCCGAAAAAAGCTT CAGATGGAAAGACATATGATGCATACATACTATGTCCAAAGACCCCTGGTGACGGGTCCA CCTCTAACTCAGATATTTTTGTGTTTAAAGTCTTGCCTGAGGTCTTGGAAAAACAGTGTG GATATAAGCTGTTTATCTGTGGCAGGGACGACTACGTTGGGGAAAGCATTGCTGAGGTTA CTAATGAAAACATAAAGAAAAGCAGAAGACTGATTGTGATTTTGGTCCGAGAAACATCAG AATTCAGGTGGCTGGGGAATTCATCTCAAGAGCAGATAGCTATGTACAATGCTCTCATTC AGGAAGGAATTAAAGTTGTCCTGCTGGAGCTGGAGAATATCCAAGACTATGAGAAAATGC CAGAATCCATAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 195-313, + strand, RNAz p=0.997307 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 195-313, + strand, RNAz p=0.997307 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-378, gnl|bosTau2|chr11 (7300168-7300564) | |
| 1-378, gnl|Hg17|chr2 (102243256-102243658) | |
| 478-633, gnl|bosTau2|chr11 (7304553-7304708) | |
| 478-633, gnl|Hg17|chr2 (102247661-102247816) | |
| 478-633, gnl|Mm7|chr1 (40541344-40541499) | |
| 776-946, gnl|bosTau2|chr11 (7311801-7311971) | |
| 776-946, gnl|canFam2|chr10 (43954713-43954503) | |
| 776-946, gnl|danRer3|chrNA (108826872-108826667) | |
| 776-946, gnl|dasNov1|scaffold_38733 (41158-41372) | |
| 776-946, gnl|echTel1|scaffold_255286 (10743-10956) | |
| 776-946, gnl|galGal2|chr1 (126877527-126877732) | |
| 776-946, gnl|hg17|chr2 (102250419-102250634) | |
| 776-946, gnl|Hg17|chr2 (102250454-102250624) | |
| 776-946, gnl|loxAfr1|scaffold_1970 (113997-113783) | |
| 776-946, gnl|mm7|chr1 (40552163-40552375) | |
| 776-946, gnl|Mm7|chr1 (40552198-40552368) | |
| 776-946, gnl|monDom2|scaffold_11 (20325234-20325442) | |
| 776-946, gnl|oryCun1|scaffold_203127 (44136-43926) | |
| 776-946, gnl|panTro1|chr12 (105147064-105147278) | |
| 776-946, gnl|rheMac2|chr13 (102109297-102109512) | |
| 776-946, gnl|rn3|chr9 (39473871-39474083) | |
| 776-946, gnl|xenTro1|scaffold_85 (606768-606985) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-378, gnl|bosTau2|chr11 (7300168-7300564) | |
| 1-378, gnl|Hg17|chr2 (102243256-102243658) | |
| 478-633, gnl|bosTau2|chr11 (7304553-7304708) | |
| 478-633, gnl|Hg17|chr2 (102247661-102247816) | |
| 478-633, gnl|Mm7|chr1 (40541344-40541499) | |
| 776-946, gnl|bosTau2|chr11 (7311801-7311971) | |
| 776-946, gnl|canFam2|chr10 (43954713-43954503) | |
| 776-946, gnl|danRer3|chrNA (108826872-108826667) | |
| 776-946, gnl|dasNov1|scaffold_38733 (41158-41372) | |
| 776-946, gnl|echTel1|scaffold_255286 (10743-10956) | |
| 776-946, gnl|galGal2|chr1 (126877527-126877732) | |
| 776-946, gnl|hg17|chr2 (102250419-102250634) | |
| 776-946, gnl|Hg17|chr2 (102250454-102250624) | |
| 776-946, gnl|loxAfr1|scaffold_1970 (113997-113783) | |
| 776-946, gnl|mm7|chr1 (40552163-40552375) | |
| 776-946, gnl|Mm7|chr1 (40552198-40552368) | |
| 776-946, gnl|monDom2|scaffold_11 (20325234-20325442) | |
| 776-946, gnl|oryCun1|scaffold_203127 (44136-43926) | |
| 776-946, gnl|panTro1|chr12 (105147064-105147278) | |
| 776-946, gnl|rheMac2|chr13 (102109297-102109512) | |
| 776-946, gnl|rn3|chr9 (39473871-39474083) | |
| 776-946, gnl|xenTro1|scaffold_85 (606768-606985) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) |