Non-Coding RNA Search

Ss1.1-rnlu1831b_c12.5

Sequence:


               
               TTACAACACATCTCAATAAAGACTACATTTCAAGTGCTTGAGAGCCACCTGTGACCAGTG
ACTACCATATTGAATAGCAAATGTCTAAAAGGACATTCAGAGCTAAAAAGACACAGGCAA
AAATACTTTTTCTTTTGAGGGAGGATTTTTTTTACAACAGCTATAGATGCTATAACATTA
TCTACTGTAATATGAAATTTAACATTATTCTGAATAAGCTTGTAAGATCTCAGCTCAGAA
TTTCACTTTATTCCTGGTTTTGTTGCCTTTTTTTGGAAGACAGAGATGCCTGTTATTCAG
GCCAACATGCCTGATAAAAGACCGCTGGGAAATTTAATCTGGATTCAAAGATAATACAAG
ATAATCTGGATGCTTATATTCTGTAGTCAAAATGTAAATTTGAACACTAAAATAAATGTC
TCCTAATAGCTCACAGAGCAAAATTTACCATATAGTAGTAAAGTTACTATTAAAATATAT
TCTCATTTACTGTCAGTTTGAAAGATGAGATGAATTTCACCCAAACTGGTCTCATCCCTC
TCTGATTTAGATTCTAATAGTTGCTATGTTACTAGAACATGACAGTTGCTCATAGTTAGC
TGTGCTCACTAGCCGGGTATTTCTTTCGGTTTGGTATTTCTTTCAGTTAGTGCTAGTTTT
CTTGTTTTGTTTTGTTTTAATTTCTTGTAACAACCTCCAAGTTTTGGTGCCTTACCACAA
TAAACATTGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACAACACATCTCAATAAAGACTACATTTCAAGTGCTTGAGAGCCACCTGTGACCAGTG
ACTACCATATTGAATAGCAAATGTCTAAAAGGACATTCAGAGCTAAAAAGACACAGGCAA
AAATACTTTTTCTTTTGAGGGAGGATTTTTTTTACAACAGCTATAGATGCTATAACATTA
TCTACTGTAATATGAAATTTAACATTATTCTGAATAAGCTTGTAAGATCTCAGCTCAGAA
TTTCACTTTATTCCTGGTTTTGTTGCCTTTTTTTGGAAGACAGAGATGCCTGTTATTCAG
GCCAACATGCCTGATAAAAGACCGCTGGGAAATTTAATCTGGATTCAAAGATAATACAAG
ATAATCTGGATGCTTATATTCTGTAGTCAAAATGTAAATTTGAACACTAAAATAAATGTC
TCCTAATAGCTCACAGAGCAAAATTTACCATATAGTAGTAAAGTTACTATTAAAATATAT
TCTCATTTACTGTCAGTTTGAAAGATGAGATGAATTTCACCCAAACTGGTCTCATCCCTC
TCTGATTTAGATTCTAATAGTTGCTATGTTACTAGAACATGACAGTTGCTCATAGTTAGC
TGTGCTCACTAGCCGGGTATTTCTTTCGGTTTGGTATTTCTTTCAGTTAGTGCTAGTTTT
CTTGTTTTGTTTTGTTTTAATTTCTTGTAACAACCTCCAAGTTTTGGTGCCTTACCACAA
TAAACATTGATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               365-589, - strand, RNAz p=0.903811

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-589, - strand, RNAz p=0.903811

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-623, gnl|bosTau2|chr26 (8343956-8343318)
               

               
               1-623, gnl|Hg17|chr10 (97619624-97620552)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-623, gnl|bosTau2|chr26 (8343956-8343318)
               

               
               1-623, gnl|Hg17|chr10 (97619624-97620552)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               fco (0.157208)
               

               
               tra (0.123092)

	1-623, gnl\|bosTau2\|chr26 (8343956-8343318)
	1-623, gnl\|Hg17\|chr10 (97619624-97620552)

	aor (0.195274)
	nlu (0.191681)
	fbs (0.175346)
	fco (0.157208)
	tra (0.123092)