Non-Coding RNA Search

Ss1.1-rnlu1833b_b22.5

Sequence:


               
               TGGCCTCCTGGGAGCACTACACCTGGTGATGACTCTCGTCGTGGCCGCGGCGCGGGCCGA
GAAGGAAGCATTTATTCAGTCGGAGAGCATAATAGAAGTACTACGTTTTGATGATGGAGG
GCTTCTACAGACTGAGACAACACTTGGACTCAGTTCATATCAACAGAAAAGTATATCTCT
GTACCGGGGTAATTGCAGACCTATACGATTTGAGCCACCAATGCTGGATTTCCATGAACA
ACCAGTTGGAATGCCAAAAATGGAAAAAGTTTACTTACATAATCCTAGTTCTGAAGAAAC
TATTACTTTAGTATCAATATCTGCTACAACATCACATTTTCATGCGTCATTTTTTCAAAA
TAGGAAAATTCTTCCAGGAGGAAACACATCATTTGATGTAGTTTTTCTTGCAAGAGTAGT
GGGAAATGTAGAAAATACTTTATTTATTAACACTTCTAATCATGGGGTATTCACTTACCA
GGTATTTGGTGTTGGAGTTCCAAATCCATATCGATTGAGGCCATTCCTTGGGGCCAGAGT
CCCTGTGAATAGCAGTTTCTCACCTAAACATACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCTCCTGGGAGCACTACACCTGGTGATGACTCTCGTCGTGGCCGCGGCGCGGGCCGA
GAAGGAAGCATTTATTCAGTCGGAGAGCATAATAGAAGTACTACGTTTTGATGATGGAGG
GCTTCTACAGACTGAGACAACACTTGGACTCAGTTCATATCAACAGAAAAGTATATCTCT
GTACCGGGGTAATTGCAGACCTATACGATTTGAGCCACCAATGCTGGATTTCCATGAACA
ACCAGTTGGAATGCCAAAAATGGAAAAAGTTTACTTACATAATCCTAGTTCTGAAGAAAC
TATTACTTTAGTATCAATATCTGCTACAACATCACATTTTCATGCGTCATTTTTTCAAAA
TAGGAAAATTCTTCCAGGAGGAAACACATCATTTGATGTAGTTTTTCTTGCAAGAGTAGT
GGGAAATGTAGAAAATACTTTATTTATTAACACTTCTAATCATGGGGTATTCACTTACCA
GGTATTTGGTGTTGGAGTTCCAAATCCATATCGATTGAGGCCATTCCTTGGGGCCAGAGT
CCCTGTGAATAGCAGTTTCTCACCTAAACATACACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               259-376, - strand, RNAz p=0.741674

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-376, - strand, RNAz p=0.741674

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               241-376, gnl|bosTau2|chr11 (3078561-3078697)
               

               
               241-376, gnl|Hg17|chr2 (97934408-97934272)
               

               
               241-376, gnl|Mm7|chr1 (37096348-37096212)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               241-376, gnl|bosTau2|chr11 (3078561-3078697)
               

               
               241-376, gnl|Hg17|chr2 (97934408-97934272)
               

               
               241-376, gnl|Mm7|chr1 (37096348-37096212)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	241-376, gnl\|bosTau2\|chr11 (3078561-3078697)
	241-376, gnl\|Hg17\|chr2 (97934408-97934272)
	241-376, gnl\|Mm7\|chr1 (37096348-37096212)