Non-Coding RNA Search

Ss1.1-rnlu1833b_k19.5

Sequence:


               
               ACCAGGCCCTTGTGACTGCCATCTGACGCCACTGTGGCCGTCTGCAATGTCTGCAGAACT
CCTTGGAGCTCTTTCTAGGGATGATGTCCACAAGGCAGATGGGGACAAAGAAGCCGGAGG
AGCAACCTGGAAGCCATAGGGGGTGGGATTCAACTCATACCCTGGATCCCTGTTTCCAAG
AAAAGCAAAAGAGCAAAGAGACTGAAGTTGTAAACGTTATAAGCAGTTTTTATATATAAC
TTATTTAATATGAATGTGACTTATGCGTAACCTTTTCTCTGGAGTTGTCACCGTGAAACT
ACTTAATCACTTCCATGAGAATTCAGAAAGGGACTTAAGTAGGTGGAAGACAAAGGGAAT
TTTGTAATAATGACTTGTTTAAAAAAAGAAATAATTCAATGGAAATATATTAAAACAAGG
AAATGCCCACCTTAAACTAGATGTTACTTAGCTGTGAGGTACCTTGCTGAAATCTCAGCT
TCCAAAATGCACTTGCCTCAGACTGCGTAGGGGGTGGATATATTTAGAAGCAAATCTGAG
GCCTGGTTCTGGTTCTGGCTTTAAAATAAGGCCAATATTAGCACAATGCTATGATTCTAC
TAAAAGACACCCAGAATGGCAGGATTTCTGCTCATGCCTTAATAGGTTCAGAAGGCTTCA
GTAAGGTCAGACATAAAAACAAGGAATAGCACTTTTTTCCAAATAGAAAAATACAAAACA
ATGGGGAAAAGGACATGAATCTTATTTCATCTATTTTCTTTTAATATCATCTTAATTTTT
TTCTCCACCATTATATTCCTAGTAAATAAATATAAAAGAGAGGAGGAAAGCAATCCTCAT
TGTTTTCTGTTTTAAGAAAGGAAAAAAAAAACTGCATTATTTTTGTAAAGTATTTATTGA
GTCATTTAGTCTTGTGCATCAAGCAATTGTAATATGACCTGGTCCTGTAGGGTAGAACTT
AGAGCAAATAAAGAGTTGGTTCTTATGCAATCTTTACTTGCAGAACTCCAGGAAAAGAGA
TTATATAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAGGCCCTTGTGACTGCCATCTGACGCCACTGTGGCCGTCTGCAATGTCTGCAGAACT
CCTTGGAGCTCTTTCTAGGGATGATGTCCACAAGGCAGATGGGGACAAAGAAGCCGGAGG
AGCAACCTGGAAGCCATAGGGGGTGGGATTCAACTCATACCCTGGATCCCTGTTTCCAAG
AAAAGCAAAAGAGCAAAGAGACTGAAGTTGTAAACGTTATAAGCAGTTTTTATATATAAC
TTATTTAATATGAATGTGACTTATGCGTAACCTTTTCTCTGGAGTTGTCACCGTGAAACT
ACTTAATCACTTCCATGAGAATTCAGAAAGGGACTTAAGTAGGTGGAAGACAAAGGGAAT
TTTGTAATAATGACTTGTTTAAAAAAAGAAATAATTCAATGGAAATATATTAAAACAAGG
AAATGCCCACCTTAAACTAGATGTTACTTAGCTGTGAGGTACCTTGCTGAAATCTCAGCT
TCCAAAATGCACTTGCCTCAGACTGCGTAGGGGGTGGATATATTTAGAAGCAAATCTGAG
GCCTGGTTCTGGTTCTGGCTTTAAAATAAGGCCAATATTAGCACAATGCTATGATTCTAC
TAAAAGACACCCAGAATGGCAGGATTTCTGCTCATGCCTTAATAGGTTCAGAAGGCTTCA
GTAAGGTCAGACATAAAAACAAGGAATAGCACTTTTTTCCAAATAGAAAAATACAAAACA
ATGGGGAAAAGGACATGAATCTTATTTCATCTATTTTCTTTTAATATCATCTTAATTTTT
TTCTCCACCATTATATTCCTAGTAAATAAATATAAAAGAGAGGAGGAAAGCAATCCTCAT
TGTTTTCTGTTTTAAGAAAGGAAAAAAAAAACTGCATTATTTTTGTAAAGTATTTATTGA
GTCATTTAGTCTTGTGCATCAAGCAATTGTAATATGACCTGGTCCTGTAGGGTAGAACTT
AGAGCAAATAAAGAGTTGGTTCTTATGCAATCTTTACTTGCAGAACTCCAGGAAAAGAGA
TTATATAATAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               264-371, + strand, RNAz p=0.985933

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               264-371, + strand, RNAz p=0.985933

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK074473, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK074473, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1032, gnl|bosTau2|chr13 (3201837-3200799)
               

               
               2-1032, gnl|Hg17|chr20 (13228263-13229282)
               

               
               2-1032, gnl|Mm7|chr2 (139498479-139499417)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1032, gnl|bosTau2|chr13 (3201837-3200799)
               

               
               2-1032, gnl|Hg17|chr20 (13228263-13229282)
               

               
               2-1032, gnl|Mm7|chr2 (139498479-139499417)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cov (0.132153)

	2-1032, gnl\|bosTau2\|chr13 (3201837-3200799)
	2-1032, gnl\|Hg17\|chr20 (13228263-13229282)
	2-1032, gnl\|Mm7\|chr2 (139498479-139499417)