Ss1.1-rnlu1836b_o16.5
|
TGGAGGGTATGGAGGCTATGATGACTATGGTGGCTATAATGATGGGTATGGCTTTGGGTC
TGATAGATTTGGAAGAGACCTCAATTACTGTTTTTCAGGAATGTCTGATCATAGATACGG
AGATGGTGGGTCCAGTTTTCAGAGCACCACGGGGCACTGTGTCCACATGAGGGGATTACC
TTACAGAGCCACTGAAAATGATATTTACAATTTTTTCTCACCTCTCAACCCCATGAGAGT
ACACATTGAAATCGGACCCGATGGCCGAGTTACTGGTGAGGCAGATGTTGAATTTGCTAC
TCATGAAGATGCCGTGGCAGCTATGGCAAAAGACAAAGCTAATATGCAACACAGATACGT
GGAGCTCTTCTTGAATTCTACCGCAGGCACAAGTGGGGGCGCTTATGATCACAGCTATGT
AGAACTCTTTTTGAATTCTACAGCAGGGGCAAGTGGTGGTGCCTATGGTAGCCAAATGAT
GGGAGGGATGGGCATATCCAACCAGTCTAGTTACGGAGGTCCTGCTAGCCAGCAGCTGAG
TGGTGGTTATGGAGGCGGTTATGGTGGTCAGAGCAGTATGAGTGGATATGACCAAGTTCT
GCAGGAAAACTCCAGTGACTATCAATCAAACCTCGCTTAGGCAGAGAAGAAGCACTGAAC
ATCTGCAACAAAAGCAAGCCTTGCATTTATGGGAGTTGACTAGAACAGAAGAGATGGCCA
GGCATATCCAATATGATTGTTAAATGGGAAATATCATTGATTCTGATCACTCTTTCCTTC
TTTGTTTCCTTCCTTCTTTCTTTCTTTCTTTCTTCTTTTTTTTTTTTTTTTTTAAGAAAA
CAAAAACTAAGTTTAACAGTTTTGCATTACAGGCTTGTGATTTATGCTTACTGTAAAGTG
GAAGTCAAGATTGTCTTAAAACTTCAAGCTCAGTAATTTTGAACACCGAAACATTCATCT
AGGATGTAATAACAAAGTTCAGTATTGACCATAACTGTTAAAACAACTTTCAGCTTTCCT
CAAGTTAGTTACGTTGTAGGAGTGTACCTAAGCAGTAAGCGTATTTAGGTTAAAGCAGTT
TCACTTATGTTAAATGTTGCTCTTATACCACAATACATTGAAAACATTGGATGCATGTTG
AGAAACATGCTTTTCTGTAAAACTCAAATATAGGAGCTATGTCTACGATTTAAAGTGAAA
ACATTTGGCATGTTTGTTAATTCTAGCTTTTTGGTTTAATATCCTGTAAGGCACGTGAGT
GTACACTTTTACTTTTTTTTTTTTAAAAGCTCTGGGACAATTTCAAGATGTAATACCAAT
ACTTTAGGAGTTTGGTCGTGTCGTTTGTATAAAATCCTGAGGCTTTGATTTAAATCTTTC
CTTGTATTGTGATTTCCATTAGATGTATTGTACTAAGTGAAACTTGTTAAATAAATCTTC
CTTTTAAAAACT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGGAGGGTATGGAGGCTATGATGACTATGGTGGCTATAATGATGGGTATGGCTTTGGGTC
TGATAGATTTGGAAGAGACCTCAATTACTGTTTTTCAGGAATGTCTGATCATAGATACGG
AGATGGTGGGTCCAGTTTTCAGAGCACCACGGGGCACTGTGTCCACATGAGGGGATTACC
TTACAGAGCCACTGAAAATGATATTTACAATTTTTTCTCACCTCTCAACCCCATGAGAGT
ACACATTGAAATCGGACCCGATGGCCGAGTTACTGGTGAGGCAGATGTTGAATTTGCTAC
TCATGAAGATGCCGTGGCAGCTATGGCAAAAGACAAAGCTAATATGCAACACAGATACGT
GGAGCTCTTCTTGAATTCTACCGCAGGCACAAGTGGGGGCGCTTATGATCACAGCTATGT
AGAACTCTTTTTGAATTCTACAGCAGGGGCAAGTGGTGGTGCCTATGGTAGCCAAATGAT
GGGAGGGATGGGCATATCCAACCAGTCTAGTTACGGAGGTCCTGCTAGCCAGCAGCTGAG
TGGTGGTTATGGAGGCGGTTATGGTGGTCAGAGCAGTATGAGTGGATATGACCAAGTTCT
GCAGGAAAACTCCAGTGACTATCAATCAAACCTCGCTTAGGCAGAGAAGAAGCACTGAAC
ATCTGCAACAAAAGCAAGCCTTGCATTTATGGGAGTTGACTAGAACAGAAGAGATGGCCA
GGCATATCCAATATGATTGTTAAATGGGAAATATCATTGATTCTGATCACTCTTTCCTTC
TTTGTTTCCTTCCTTCTTTCTTTCTTTCTTTCTTCTTTTTTTTTTTTTTTTTTAAGAAAA
CAAAAACTAAGTTTAACAGTTTTGCATTACAGGCTTGTGATTTATGCTTACTGTAAAGTG
GAAGTCAAGATTGTCTTAAAACTTCAAGCTCAGTAATTTTGAACACCGAAACATTCATCT
AGGATGTAATAACAAAGTTCAGTATTGACCATAACTGTTAAAACAACTTTCAGCTTTCCT
CAAGTTAGTTACGTTGTAGGAGTGTACCTAAGCAGTAAGCGTATTTAGGTTAAAGCAGTT
TCACTTATGTTAAATGTTGCTCTTATACCACAATACATTGAAAACATTGGATGCATGTTG
AGAAACATGCTTTTCTGTAAAACTCAAATATAGGAGCTATGTCTACGATTTAAAGTGAAA
ACATTTGGCATGTTTGTTAATTCTAGCTTTTTGGTTTAATATCCTGTAAGGCACGTGAGT
GTACACTTTTACTTTTTTTTTTTTAAAAGCTCTGGGACAATTTCAAGATGTAATACCAAT
ACTTTAGGAGTTTGGTCGTGTCGTTTGTATAAAATCCTGAGGCTTTGATTTAAATCTTTC
CTTGTATTGTGATTTCCATTAGATGTATTGTACTAAGTGAAACTTGTTAAATAAATCTTC
CTTTTAAAAACT
|
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gi|18266700|ref|NP_543172.1| |
Protein identifier
|
gi|18266700|ref|NP_543172.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-406, gnl|bosTau2|chr28 (8524781-8525186) |
|
1-406, gnl|Hg17|chr10 (43202628-43202223) |
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1-406, gnl|Mm7|chr6 (117949928-117950333) |
| |
|
4-387, gnl|bosTau2|chr12 (22299139-22299519) |
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4-387, gnl|Hg17|chr10 (69768901-69771387) |
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4-387, gnl|Mm7|chr10 (62536399-62534923) |
| |
|
837-1452, gnl|bosTau2|chr7 (281949-281351) |
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837-1452, gnl|canFam2|chr11 (5062647-5063285) |
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837-1452, gnl|dasNov1|scaffold_83510 (4061-4691) |
|
837-1452, gnl|echTel1|scaffold_322700 (50317-50921) |
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837-1452, gnl|galGal2|chr13 (12519579-12520238) |
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837-1452, gnl|hg17|chr1 (209151505-209152165) |
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837-1452, gnl|Hg17|chr5 (178974390-178973788) |
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837-1452, gnl|loxAfr1|scaffold_25368 (5861-6509) |
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837-1452, gnl|mm7|chr11 (50342651-50343288) |
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837-1452, gnl|Mm7|chr11 (50342694-50343284) |
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837-1452, gnl|monDom2|scaffold_6 (56505949-56505292) |
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837-1452, gnl|oryCun1|scaffold_87402 (460-1100) |
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837-1452, gnl|panTro1|chr1 (192791477-192792134) |
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837-1452, gnl|rheMac2|chr6 (176246861-176246187) |
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837-1452, gnl|rn3|chr10 (35930543-35931184) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-406, gnl|bosTau2|chr28 (8524781-8525186) |
|
1-406, gnl|Hg17|chr10 (43202628-43202223) |
|
1-406, gnl|Mm7|chr6 (117949928-117950333) |
| |
|
4-387, gnl|bosTau2|chr12 (22299139-22299519) |
|
4-387, gnl|Hg17|chr10 (69768901-69771387) |
|
4-387, gnl|Mm7|chr10 (62536399-62534923) |
| |
|
837-1452, gnl|bosTau2|chr7 (281949-281351) |
|
837-1452, gnl|canFam2|chr11 (5062647-5063285) |
|
837-1452, gnl|dasNov1|scaffold_83510 (4061-4691) |
|
837-1452, gnl|echTel1|scaffold_322700 (50317-50921) |
|
837-1452, gnl|galGal2|chr13 (12519579-12520238) |
|
837-1452, gnl|hg17|chr1 (209151505-209152165) |
|
837-1452, gnl|Hg17|chr5 (178974390-178973788) |
|
837-1452, gnl|loxAfr1|scaffold_25368 (5861-6509) |
|
837-1452, gnl|mm7|chr11 (50342651-50343288) |
|
837-1452, gnl|Mm7|chr11 (50342694-50343284) |
|
837-1452, gnl|monDom2|scaffold_6 (56505949-56505292) |
|
837-1452, gnl|oryCun1|scaffold_87402 (460-1100) |
|
837-1452, gnl|panTro1|chr1 (192791477-192792134) |
|
837-1452, gnl|rheMac2|chr6 (176246861-176246187) |
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837-1452, gnl|rn3|chr10 (35930543-35931184) |
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cbl (0.688784) |
|
cut (0.339847) |
|
liv (0.292569) |
|
mgp (0.230681) |
|
jca (0.22792) |
|
tes (0.207814) |
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jej (0.197844) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
sin (0.174948) |
|
cki (0.165235) |
|
lun (0.150489) |
|
cst (0.140036) |
|
kid (0.129735) |
|
tra (0.123092) |
|
ecc (0.115035) |
|
cbl (0.688784) |
|
cut (0.339847) |
|
liv (0.292569) |
|
mgp (0.230681) |
|
jca (0.22792) |
|
tes (0.207814) |
|
jej (0.197844) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
sin (0.174948) |
|
cki (0.165235) |
|
lun (0.150489) |
|
cst (0.140036) |
|
kid (0.129735) |
|
tra (0.123092) |
|
ecc (0.115035) |
