Non-Coding RNA Search

Ss1.1-rnlu1838b_p3.5.5

Sequence:


               
               CCGAGGGGGCCGGGGTCACCCTGAGCTAAGACTGCGCCGCAATGCTGAGCAGGTTCCTGG
GTCCGCGCTACCGCGAGCTGGCCAGAAACTGGATTCCCACGGCCAGCATGTGGGGTGCTG
TGGGTGCCGTGGGGCTGGTATGGGCCACTGACTGGCGGCTGATTCTGGATTGGGTGCCCT
ACATCAATGGCAAGTTTAAGAAGGAAGATTAAACTGAGCCCCCTCAGACCCCTCTGGCAT
CTGGTGGTGCTGCCTCCTTCATCTGCATCTGGAATAGCCCAGGCTCTCAGGATGGACTTC
GGGGAAGTACACAACAAATAGACTTTCTATGTTGTGGAAATCGCTTTGGTGTGTGAATGC
ACAGCATTAAACTTGTTCTGAAACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGCCCAGGGCCCTGAGAGATCCTGGGATCCTTTTAGCTCCCAAACTGT
GCAAATGTAGGCATTTCCCAGTGGCTGGAAGACATGGCTTGCTGGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAGGGGGCCGGGGTCACCCTGAGCTAAGACTGCGCCGCAATGCTGAGCAGGTTCCTGG
GTCCGCGCTACCGCGAGCTGGCCAGAAACTGGATTCCCACGGCCAGCATGTGGGGTGCTG
TGGGTGCCGTGGGGCTGGTATGGGCCACTGACTGGCGGCTGATTCTGGATTGGGTGCCCT
ACATCAATGGCAAGTTTAAGAAGGAAGATTAAACTGAGCCCCCTCAGACCCCTCTGGCAT
CTGGTGGTGCTGCCTCCTTCATCTGCATCTGGAATAGCCCAGGCTCTCAGGATGGACTTC
GGGGAAGTACACAACAAATAGACTTTCTATGTTGTGGAAATCGCTTTGGTGTGTGAATGC
ACAGCATTAAACTTGTTCTGAAACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGCCCAGGGCCCTGAGAGATCCTGGGATCCTTTTAGCTCCCAAACTGT
GCAAATGTAGGCATTTCCCAGTGGCTGGAAGACATGGCTTGCTGGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13385112|ref|NP_079926.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13385112|ref|NP_079926.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-201, - strand, RNAz p=0.65922

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-201, - strand, RNAz p=0.65922

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               42-355, gnl|bosTau2|chr7 (27983786-27983475)
               


               
               129-325, gnl|bosTau2|chr23 (39125029-39124824)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-355, gnl|bosTau2|chr7 (27983786-27983475)
               


               
               129-325, gnl|bosTau2|chr23 (39125029-39124824)

Expressed library(ies): 37 entry(ies)

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Expressed library(ies): 37 entry(ies)

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               mas (1.47213)
               

               
               hlv (1.39256)
               

               
               ill (0.877963)
               

               
               nep (0.7357)
               

               
               ton (0.702001)
               

               
               col (0.585023)
               

               
               duo (0.518403)
               

               
               pty (0.428143)
               

               
               nms (0.427716)
               

               
               che (0.408942)
               

               
               fcc (0.39557)
               

               
               nlu (0.383362)
               

               
               mcp (0.341297)
               

               
               eye (0.341006)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               cag (0.302389)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (1.47213)
               

               
               hlv (1.39256)
               

               
               ill (0.877963)
               

               
               nep (0.7357)
               

               
               ton (0.702001)
               

               
               col (0.585023)
               

               
               duo (0.518403)
               

               
               pty (0.428143)
               

               
               nms (0.427716)
               

               
               che (0.408942)
               

               
               fcc (0.39557)
               

               
               nlu (0.383362)
               

               
               mcp (0.341297)
               

               
               eye (0.341006)
               

               
               cki (0.330469)
               

               
               nco (0.323468)
               

               
               cag (0.302389)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               eje (0.197668)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	42-355, gnl\|bosTau2\|chr7 (27983786-27983475)

	129-325, gnl\|bosTau2\|chr23 (39125029-39124824)

	mas (1.47213)
	hlv (1.39256)
	ill (0.877963)
	nep (0.7357)
	ton (0.702001)
	col (0.585023)
	duo (0.518403)
	pty (0.428143)
	nms (0.427716)
	che (0.408942)
	fcc (0.39557)
	nlu (0.383362)
	mcp (0.341297)
	eye (0.341006)
	cki (0.330469)
	nco (0.323468)
	cag (0.302389)
	cst (0.280073)
	fce (0.271592)
	ebs (0.236602)
	ecc (0.23007)
	jca (0.22792)
	nbm (0.198649)
	eje (0.197668)
	fty (0.17584)
	fhi (0.169578)
	nje (0.16592)
	bfe (0.149858)
	nca (0.136874)
	ssp (0.13552)
	pla (0.133672)
	nmm (0.132802)
	cov (0.132153)
	ese (0.126502)
	eep (0.122564)
	cty (0.10408)
	jej (0.0989218)