Non-Coding RNA Search

Ss1.1-rnlu1840b_i16.5

Sequence:


               
               CTGCTCTTCCTGCTGGAGGCTGGGGCCTTTGGGGAGCCAGCCGGCAGCCCAGCCAACCGC
AGTCGGCGGGGGGTGAGCGAGACAGCACCAGCAAGTCGCCGGGGAGAGCTGGCCGTGTGT
GATGCAGTCAGCGGCTGGGTGACAGACCGCCGGACTGCCGTGGACCTGCGTGGGCGTGAG
GTGGAGGTGCTGGGTGAGGTGCCTGCGGCTGGTGGCAGTCCCCTTCGCCAGTACTTCTTT
GAAACCCGCTGCAAGGCTGACAGCGCTGGGGAGGACGGCCCCGGTGGGGGTGGAGGGGGC
TGCCGGGGCGTGGACCGGAGGCACTGGGTGTCTGAATGTAAGGCCAAGCAGTCCTACGTG
CGGGCATTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTCTTCCTGCTGGAGGCTGGGGCCTTTGGGGAGCCAGCCGGCAGCCCAGCCAACCGC
AGTCGGCGGGGGGTGAGCGAGACAGCACCAGCAAGTCGCCGGGGAGAGCTGGCCGTGTGT
GATGCAGTCAGCGGCTGGGTGACAGACCGCCGGACTGCCGTGGACCTGCGTGGGCGTGAG
GTGGAGGTGCTGGGTGAGGTGCCTGCGGCTGGTGGCAGTCCCCTTCGCCAGTACTTCTTT
GAAACCCGCTGCAAGGCTGACAGCGCTGGGGAGGACGGCCCCGGTGGGGGTGGAGGGGGC
TGCCGGGGCGTGGACCGGAGGCACTGGGTGTCTGAATGTAAGGCCAAGCAGTCCTACGTG
CGGGCATTGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4558268|pdb|1B8M|B

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4558268|pdb|1B8M|B

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-199, + strand, RNAz p=0.510731

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, + strand, RNAz p=0.510731

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-371, gnl|bosTau2|chr18 (48172899-48172529)
               

               
               1-371, gnl|canFam2|chr1 (110264478-110264019)
               

               
               1-371, gnl|dasNov1|scaffold_898 (120207-119819)
               

               
               1-371, gnl|hg17|chr19 (54220506-54220969)
               

               
               1-371, gnl|Hg17|chr19 (54256895-54256525)
               

               
               1-371, gnl|loxAfr1|scaffold_73651 (10123-10579)
               

               
               1-371, gnl|mm7|chr7 (41591830-41591371)
               

               
               1-371, gnl|Mm7|chr7 (41591342-41591712)
               

               
               1-371, gnl|monDom2|scaffold_105 (4214313-4214722)
               

               
               1-371, gnl|oryCun1|scaffold_198628 (45908-46349)
               

               
               1-371, gnl|panTro1|chr20_random (24683239-24683702)
               

               
               1-371, gnl|rheMac2|chr19 (55306871-55307326)
               

               
               1-371, gnl|rn3|chr1 (95966056-95965597)
               

               
               1-371, gnl|tetNig1|chr3 (14642588-14642071)
               

               
               1-371, gnl|xenTro1|scaffold_250 (1445573-1445984)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-371, gnl|bosTau2|chr18 (48172899-48172529)
               

               
               1-371, gnl|canFam2|chr1 (110264478-110264019)
               

               
               1-371, gnl|dasNov1|scaffold_898 (120207-119819)
               

               
               1-371, gnl|hg17|chr19 (54220506-54220969)
               

               
               1-371, gnl|Hg17|chr19 (54256895-54256525)
               

               
               1-371, gnl|loxAfr1|scaffold_73651 (10123-10579)
               

               
               1-371, gnl|mm7|chr7 (41591830-41591371)
               

               
               1-371, gnl|Mm7|chr7 (41591342-41591712)
               

               
               1-371, gnl|monDom2|scaffold_105 (4214313-4214722)
               

               
               1-371, gnl|oryCun1|scaffold_198628 (45908-46349)
               

               
               1-371, gnl|panTro1|chr20_random (24683239-24683702)
               

               
               1-371, gnl|rheMac2|chr19 (55306871-55307326)
               

               
               1-371, gnl|rn3|chr1 (95966056-95965597)
               

               
               1-371, gnl|tetNig1|chr3 (14642588-14642071)
               

               
               1-371, gnl|xenTro1|scaffold_250 (1445573-1445984)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	1-371, gnl\|bosTau2\|chr18 (48172899-48172529)
	1-371, gnl\|canFam2\|chr1 (110264478-110264019)
	1-371, gnl\|dasNov1\|scaffold_898 (120207-119819)
	1-371, gnl\|hg17\|chr19 (54220506-54220969)
	1-371, gnl\|Hg17\|chr19 (54256895-54256525)
	1-371, gnl\|loxAfr1\|scaffold_73651 (10123-10579)
	1-371, gnl\|mm7\|chr7 (41591830-41591371)
	1-371, gnl\|Mm7\|chr7 (41591342-41591712)
	1-371, gnl\|monDom2\|scaffold_105 (4214313-4214722)
	1-371, gnl\|oryCun1\|scaffold_198628 (45908-46349)
	1-371, gnl\|panTro1\|chr20_random (24683239-24683702)
	1-371, gnl\|rheMac2\|chr19 (55306871-55307326)
	1-371, gnl\|rn3\|chr1 (95966056-95965597)
	1-371, gnl\|tetNig1\|chr3 (14642588-14642071)
	1-371, gnl\|xenTro1\|scaffold_250 (1445573-1445984)