Non-Coding RNA Search

Ss1.1-rnmm06c_i4.5

Sequence:


               
               CACCCCCCAGAAACCCCAGAGAGCTAGTCCCCCCGTTCACTTCTCCTGAGGCCAAGAGGA
ACAGGCAGGGCAAGCCAGACCCAAGGCCCAACAGCCCTCGTCCCCAGCACGCACTGAGGC
TCCCGGGGCCCACTGGGAGCCCCAGGAGAGCACCCCAAGTTAGCCTCTGCTCCCTAGGAC
GAGCTCTCGTGTGACCCGCAGACACAGCCCAGGTACCCAGCAAGGAAGGGATGTCGCTGG
CTGCCCAGCCCCCTCTTTTTTCTAACCAGGAAACCACCCGCCCCTCCCCGGCTCCTGGCC
GCTCCCCACAGGGAAGGACAGGGCCCGGGGTGGGGGGGGGCGTCCCCGGCACCCCAGCTC
CCTCTCCCAGCCCAGCTCTCGCCTTTGTCTCAGCACGAGTGCAATACTTCATTCCTGGTG
GTCGTCCCGGAGGCGGCGGCCAAGGTTCTCCGCTGGGGAGGCAGAAAGACTCCACAGAGG
AGAGGCAGCCGGTGCCAAGGTGCGCGGGGACGCCCAGCCGTGGAAGCAGCACCCAGGGCT
CCGATCACCCCAGCCGCGAGGCGGGAGCCAAGGAACAGGCTGCCTTTTCCGGGTTCTCTG
CCGCCGGCTGGTCCTCTTCCCTCCTCCGCGGAATTCTGCCCTTTGCTTTCCTCCTCCTGG
CCTCTCCGCGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCCCCAGAAACCCCAGAGAGCTAGTCCCCCCGTTCACTTCTCCTGAGGCCAAGAGGA
ACAGGCAGGGCAAGCCAGACCCAAGGCCCAACAGCCCTCGTCCCCAGCACGCACTGAGGC
TCCCGGGGCCCACTGGGAGCCCCAGGAGAGCACCCCAAGTTAGCCTCTGCTCCCTAGGAC
GAGCTCTCGTGTGACCCGCAGACACAGCCCAGGTACCCAGCAAGGAAGGGATGTCGCTGG
CTGCCCAGCCCCCTCTTTTTTCTAACCAGGAAACCACCCGCCCCTCCCCGGCTCCTGGCC
GCTCCCCACAGGGAAGGACAGGGCCCGGGGTGGGGGGGGGCGTCCCCGGCACCCCAGCTC
CCTCTCCCAGCCCAGCTCTCGCCTTTGTCTCAGCACGAGTGCAATACTTCATTCCTGGTG
GTCGTCCCGGAGGCGGCGGCCAAGGTTCTCCGCTGGGGAGGCAGAAAGACTCCACAGAGG
AGAGGCAGCCGGTGCCAAGGTGCGCGGGGACGCCCAGCCGTGGAAGCAGCACCCAGGGCT
CCGATCACCCCAGCCGCGAGGCGGGAGCCAAGGAACAGGCTGCCTTTTCCGGGTTCTCTG
CCGCCGGCTGGTCCTCTTCCCTCCTCCGCGGAATTCTGCCCTTTGCTTTCCTCCTCCTGG
CCTCTCCGCGTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               103-672, gnl|bosTau2|chr19 (45114731-45115317)
               

               
               103-672, gnl|Hg17|chr17 (77047128-77047711)
               

               
               103-672, gnl|Mm7|chr11 (120400488-120401080)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-672, gnl|bosTau2|chr19 (45114731-45115317)
               

               
               103-672, gnl|Hg17|chr17 (77047128-77047711)
               

               
               103-672, gnl|Mm7|chr11 (120400488-120401080)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               nmm (0.132802)

	103-672, gnl\|bosTau2\|chr19 (45114731-45115317)
	103-672, gnl\|Hg17\|chr17 (77047128-77047711)
	103-672, gnl\|Mm7\|chr11 (120400488-120401080)