Ss1.1-rnmm07c_b20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCTCGGAGGAGGCTACGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGA CACCAGCCGCCTCCACCATGCCGCCTAAGTTCGACCCCAACGAGATCAAAGTCGGTGCGT GCTTTAGATGTGGCCGGGACTGCGGGATGGAGCATCCGTCCCCGCTTACCGTCCGACCTG CGGCCCCCGCCGCAATTGCCTTTCCCGTGTCGGGCTTAAGAGCCGCTGCCTCTTAGGGGC CCGCCCTCTGGTGTTTCGTTCAGGGCGCTGTGCGGTATTGGCCGAGTCTTACTCTGGGCC TCAGCTTCCCCACGTGTAAATGGGGAGGGAGGCCCGGACGACCTATGGCGGCTTTGAGAG AGCCCACACGCCTTAGGGTAAGGTTTTGTCTCTGGGCGCTTCCCTCTAGGCTGGGATGGC CCTGGCCCCCAATGGCCTCCACCCAAGCCCGGTGTGAAAAAAGGTTGGTGATGACATTGC CGAAGGCTGCTGCCCCACGTGGCGCTTGGGCCGGTCCACGCCTGGGGGGAGGTGTGTCCT GCCTCGGTCTTCGCTGAGGTTCTTGGTTCTCTTCTGAGAAGAGGCAGAGGGTGGCGAGGC CAGGCCCGGGAAGATGCGGGGAGAAGGCTGTGGCTTCGGGCGCCCCCTCCGCAGGCACTA ACACGTTCTTTCTCTCAGTGTATCTGAGATGCACCGGTGGAGAAGTCGGGGCTACATCTG CCCTGGCCCCCAAGATCGGCCCCCTGGGTCTGTCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCTCGGAGGAGGCTACGGTGCAACTTTCTTCGGTCGTCCCGAATCCGGGTTCATCCGA CACCAGCCGCCTCCACCATGCCGCCTAAGTTCGACCCCAACGAGATCAAAGTCGGTGCGT GCTTTAGATGTGGCCGGGACTGCGGGATGGAGCATCCGTCCCCGCTTACCGTCCGACCTG CGGCCCCCGCCGCAATTGCCTTTCCCGTGTCGGGCTTAAGAGCCGCTGCCTCTTAGGGGC CCGCCCTCTGGTGTTTCGTTCAGGGCGCTGTGCGGTATTGGCCGAGTCTTACTCTGGGCC TCAGCTTCCCCACGTGTAAATGGGGAGGGAGGCCCGGACGACCTATGGCGGCTTTGAGAG AGCCCACACGCCTTAGGGTAAGGTTTTGTCTCTGGGCGCTTCCCTCTAGGCTGGGATGGC CCTGGCCCCCAATGGCCTCCACCCAAGCCCGGTGTGAAAAAAGGTTGGTGATGACATTGC CGAAGGCTGCTGCCCCACGTGGCGCTTGGGCCGGTCCACGCCTGGGGGGAGGTGTGTCCT GCCTCGGTCTTCGCTGAGGTTCTTGGTTCTCTTCTGAGAAGAGGCAGAGGGTGGCGAGGC CAGGCCCGGGAAGATGCGGGGAGAAGGCTGTGGCTTCGGGCGCCCCCTCCGCAGGCACTA ACACGTTCTTTCTCTCAGTGTATCTGAGATGCACCGGTGGAGAAGTCGGGGCTACATCTG CCCTGGCCCCCAAGATCGGCCCCCTGGGTCTGTCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-114, - strand, RNAz p=0.95984 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-114, - strand, RNAz p=0.95984 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 1-114, gnl|bosTau2|chr10 (58436735-58436622) | |
| 1-114, gnl|canFam2|chr1 (98394401-98394273) | |
| 1-114, gnl|canFam2|chr1 (98394404-98394277) | |
| 1-114, gnl|danRer3|chr5 (29473780-29473675) | |
| 1-114, gnl|danRer3|chr5 (29473784-29473629) | |
| 1-114, gnl|dasNov1|scaffold_411 (104456-104578) | |
| 1-114, gnl|dasNov1|scaffold_99683 (4059-3938) | |
| 1-114, gnl|echTel1|scaffold_9423 (4116-3988) | |
| 1-114, gnl|echTel1|scaffold_9423 (4109-3992) | |
| 1-114, gnl|fr1|chrUn (23829014-23828866) | |
| 1-114, gnl|fr1|chrUn (23829017-23828869) | |
| 1-114, gnl|hg17|chr2 (85013300-85013427) | |
| 1-114, gnl|Hg17|chr2 (203880932-203881045) | |
| 1-114, gnl|hg17|chr8 (37959665-37959779) | |
| 1-114, gnl|loxAfr1|scaffold_57590 (7178-7307) | |
| 1-114, gnl|loxAfr1|scaffold_57590 (7185-7303) | |
| 1-114, gnl|mm7|chr10 (29480053-29479929) | |
| 1-114, gnl|mm7|chr10 (128178509-128178382) | |
| 1-114, gnl|Mm7|chr10 (29480045-29479932) | |
| 1-114, gnl|monDom2|scaffold_1 (84871307-84871147) | |
| 1-114, gnl|monDom2|scaffold_75 (4411379-4411524) | |
| 1-114, gnl|oryCun1|scaffold_125431 (4262-4134) | |
| 1-114, gnl|oryCun1|scaffold_125431 (4264-4138) | |
| 1-114, gnl|panTro1|chr12 (87879443-87879570) | |
| 1-114, gnl|panTro1|chr5 (33924399-33924274) | |
| 1-114, gnl|rheMac2|chr13 (85427627-85427754) | |
| 1-114, gnl|rheMac2|chr8 (38436763-38436877) | |
| 1-114, gnl|rn3|chr3 (145493552-145493427) | |
| 1-114, gnl|rn3|chr8 (83176800-83176928) | |
| 1-114, gnl|tetNig1|chrUn_random (6716876-6716773) | |
| 1-114, gnl|tetNig1|chrUn_random (6716856-6716724) | |
| 615-752, gnl|bosTau2|chr11 (74548803-74548941) | |
| 615-752, gnl|canFam2|chr9 (59240111-59240021) | |
| 615-752, gnl|danRer3|chr5 (29472566-29472656) | |
| 615-752, gnl|dasNov1|scaffold_349 (55817-55727) | |
| 615-752, gnl|echTel1|scaffold_276204 (38298-38208) | |
| 615-752, gnl|fr1|chrUn (23827884-23827970) | |
| 615-752, gnl|galGal2|chr17 (9323248-9323333) | |
| 615-752, gnl|hg17|chr9 (127292559-127292649) | |
| 615-752, gnl|Hg17|chr9 (127292695-127292564) | |
| 615-752, gnl|loxAfr1|scaffold_8295 (11094-11184) | |
| 615-752, gnl|mm7|chr2 (32969440-32969350) | |
| 615-752, gnl|Mm7|chr2 (32969310-32969433) | |
| 615-752, gnl|monDom2|scaffold_51 (1760593-1760683) | |
| 615-752, gnl|oryCun1|scaffold_183999 (4289-4196) | |
| 615-752, gnl|panTro1|chr11 (112109873-112109963) | |
| 615-752, gnl|rheMac2|chr15 (99130107-99130017) | |
| 615-752, gnl|rn3|chr3 (11848740-11848651) | |
| 615-752, gnl|tetNig1|chrUn_random (6716017-6716107) | |
| 615-752, gnl|xenTro1|scaffold_302 (773610-773520) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-114, gnl|bosTau2|chr10 (58436735-58436622) | |
| 1-114, gnl|canFam2|chr1 (98394401-98394273) | |
| 1-114, gnl|canFam2|chr1 (98394404-98394277) | |
| 1-114, gnl|danRer3|chr5 (29473780-29473675) | |
| 1-114, gnl|danRer3|chr5 (29473784-29473629) | |
| 1-114, gnl|dasNov1|scaffold_411 (104456-104578) | |
| 1-114, gnl|dasNov1|scaffold_99683 (4059-3938) | |
| 1-114, gnl|echTel1|scaffold_9423 (4116-3988) | |
| 1-114, gnl|echTel1|scaffold_9423 (4109-3992) | |
| 1-114, gnl|fr1|chrUn (23829014-23828866) | |
| 1-114, gnl|fr1|chrUn (23829017-23828869) | |
| 1-114, gnl|hg17|chr2 (85013300-85013427) | |
| 1-114, gnl|Hg17|chr2 (203880932-203881045) | |
| 1-114, gnl|hg17|chr8 (37959665-37959779) | |
| 1-114, gnl|loxAfr1|scaffold_57590 (7178-7307) | |
| 1-114, gnl|loxAfr1|scaffold_57590 (7185-7303) | |
| 1-114, gnl|mm7|chr10 (29480053-29479929) | |
| 1-114, gnl|mm7|chr10 (128178509-128178382) | |
| 1-114, gnl|Mm7|chr10 (29480045-29479932) | |
| 1-114, gnl|monDom2|scaffold_1 (84871307-84871147) | |
| 1-114, gnl|monDom2|scaffold_75 (4411379-4411524) | |
| 1-114, gnl|oryCun1|scaffold_125431 (4262-4134) | |
| 1-114, gnl|oryCun1|scaffold_125431 (4264-4138) | |
| 1-114, gnl|panTro1|chr12 (87879443-87879570) | |
| 1-114, gnl|panTro1|chr5 (33924399-33924274) | |
| 1-114, gnl|rheMac2|chr13 (85427627-85427754) | |
| 1-114, gnl|rheMac2|chr8 (38436763-38436877) | |
| 1-114, gnl|rn3|chr3 (145493552-145493427) | |
| 1-114, gnl|rn3|chr8 (83176800-83176928) | |
| 1-114, gnl|tetNig1|chrUn_random (6716876-6716773) | |
| 1-114, gnl|tetNig1|chrUn_random (6716856-6716724) | |
| 615-752, gnl|bosTau2|chr11 (74548803-74548941) | |
| 615-752, gnl|canFam2|chr9 (59240111-59240021) | |
| 615-752, gnl|danRer3|chr5 (29472566-29472656) | |
| 615-752, gnl|dasNov1|scaffold_349 (55817-55727) | |
| 615-752, gnl|echTel1|scaffold_276204 (38298-38208) | |
| 615-752, gnl|fr1|chrUn (23827884-23827970) | |
| 615-752, gnl|galGal2|chr17 (9323248-9323333) | |
| 615-752, gnl|hg17|chr9 (127292559-127292649) | |
| 615-752, gnl|Hg17|chr9 (127292695-127292564) | |
| 615-752, gnl|loxAfr1|scaffold_8295 (11094-11184) | |
| 615-752, gnl|mm7|chr2 (32969440-32969350) | |
| 615-752, gnl|Mm7|chr2 (32969310-32969433) | |
| 615-752, gnl|monDom2|scaffold_51 (1760593-1760683) | |
| 615-752, gnl|oryCun1|scaffold_183999 (4289-4196) | |
| 615-752, gnl|panTro1|chr11 (112109873-112109963) | |
| 615-752, gnl|rheMac2|chr15 (99130107-99130017) | |
| 615-752, gnl|rn3|chr3 (11848740-11848651) | |
| 615-752, gnl|tetNig1|chrUn_random (6716017-6716107) | |
| 615-752, gnl|xenTro1|scaffold_302 (773610-773520) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| eje (0.296501) | |
| nje (0.16592) | |
| eli (0.151814) | |
| spl (0.143184) | |
| nmm (0.132802) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eje (0.296501) | |
| nje (0.16592) | |
| eli (0.151814) | |
| spl (0.143184) | |
| nmm (0.132802) |