Ss1.1-rnmm07c_f12.5
|
GCGGCTGAGGCTGAGAAATACATCTAAAGGAAGATTTCCTTTTGGTAATTTAATCAGTGC
AAGTGCAATTAAAGAAAAATGGATGTAGAAAATGAGCAGATACTGAATGTAACCCCTACA
GATCCTGATAATTTAAGTGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGGACTGAG
GAAATAAAGAATGAGATAAATGGAAATTGGATTTCGGCATCTTCCATTAATGAAGCAAGA
ATTAATGCCAAGGCAAAAAGACGACTACGGAAAAACTCATCCCGTGACTCTGGCAGAGGT
GATTCGGTCAGTGATAATGGAAGTGAAGGCCTTAGAAGTGGAGTAACTGTACCAACCAGT
CCAAAGGGAAGGTTGCTAGATAGACGATCCAGATCTGGGAAAGGAAGGGGACTACCAAAG
AAAGGTGGTGCTGGAGGCAAAGGTGTCTGGGGTACACCTGGACAGGTATATGATGTGGAG
GAAGTGGATGTGAAAGATCCTAACTATGATGATGACCAGGAGAATTGTGTTTATGAAACT
GTAGTTTTGCCTTTGGATGAAATGGCATTTGAGAAGACTTTAACACCAATCATACAGGAA
TATTTTGAGCACGGAGATACTAATGAAGTTGCGGAAATGCTAAGAGATTTAAATCTTGGT
GAAATGAAAAGTGGAGTACCGGTGTTAGCAGTGTCCTTAGCCTTGGAGGGAAAAGCTAGT
CATAGAGAAATGACATCTAAGCTTCTTTCTGACCTTTGTGGGACAGTAATGAGCACAAAT
GATGTAGAAAAATCATTTGATAAATTGTTGAAAGAGCTACCTGAATTAGCATTGGATACT
CCTAGAGCACCACAGTTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATTTTA
TGTAATACCTATATTGATAGTTACAAAGGAACTGTAGACTGTGTACAAGCTAGAGCTGCT
CTGGACAAGGCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGGCTGAGGCTGAGAAATACATCTAAAGGAAGATTTCCTTTTGGTAATTTAATCAGTGC
AAGTGCAATTAAAGAAAAATGGATGTAGAAAATGAGCAGATACTGAATGTAACCCCTACA
GATCCTGATAATTTAAGTGACTCTCTCTTTTCTGGAGATGAAGAAAATGCTGGGACTGAG
GAAATAAAGAATGAGATAAATGGAAATTGGATTTCGGCATCTTCCATTAATGAAGCAAGA
ATTAATGCCAAGGCAAAAAGACGACTACGGAAAAACTCATCCCGTGACTCTGGCAGAGGT
GATTCGGTCAGTGATAATGGAAGTGAAGGCCTTAGAAGTGGAGTAACTGTACCAACCAGT
CCAAAGGGAAGGTTGCTAGATAGACGATCCAGATCTGGGAAAGGAAGGGGACTACCAAAG
AAAGGTGGTGCTGGAGGCAAAGGTGTCTGGGGTACACCTGGACAGGTATATGATGTGGAG
GAAGTGGATGTGAAAGATCCTAACTATGATGATGACCAGGAGAATTGTGTTTATGAAACT
GTAGTTTTGCCTTTGGATGAAATGGCATTTGAGAAGACTTTAACACCAATCATACAGGAA
TATTTTGAGCACGGAGATACTAATGAAGTTGCGGAAATGCTAAGAGATTTAAATCTTGGT
GAAATGAAAAGTGGAGTACCGGTGTTAGCAGTGTCCTTAGCCTTGGAGGGAAAAGCTAGT
CATAGAGAAATGACATCTAAGCTTCTTTCTGACCTTTGTGGGACAGTAATGAGCACAAAT
GATGTAGAAAAATCATTTGATAAATTGTTGAAAGAGCTACCTGAATTAGCATTGGATACT
CCTAGAGCACCACAGTTGGTGGGCCAGTTTATTGCTAGAGCTGTTGGAGATGGAATTTTA
TGTAATACCTATATTGATAGTTACAAAGGAACTGTAGACTGTGTACAAGCTAGAGCTGCT
CTGGACAAGGCT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
120-425, gnl|bosTau2|chr26 (20318366-20318061) |
|
120-425, gnl|Hg17|chr10 (112630979-112631284) |
|
120-425, gnl|Mm7|chr19 (53821981-53822286) |
| |
|
516-634, gnl|bosTau2|chr26 (20315269-20315151) |
|
516-634, gnl|canFam2|chr28 (25213488-25213577) |
|
516-634, gnl|danRer3|chr22 (41232547-41232636) |
|
516-634, gnl|dasNov1|scaffold_31540 (2833-2754) |
|
516-634, gnl|echTel1|scaffold_238124 (9195-9106) |
|
516-634, gnl|fr1|chrUn (226411340-226411251) |
|
516-634, gnl|galGal2|chr6 (25210560-25210654) |
|
516-634, gnl|hg17|chr10 (112634993-112635082) |
|
516-634, gnl|Hg17|chr10 (112634997-112635115) |
|
516-634, gnl|loxAfr1|scaffold_31454 (7824-7735) |
|
516-634, gnl|mm7|chr19 (53825680-53825764) |
|
516-634, gnl|Mm7|chr19 (53825680-53825797) |
|
516-634, gnl|monDom2|scaffold_14 (52202782-52202696) |
|
516-634, gnl|panTro1|chr8 (114560411-114560500) |
|
516-634, gnl|rheMac2|chr9 (110588183-110588272) |
|
516-634, gnl|rn3|chr1 (260400189-260400273) |
|
516-634, gnl|tetNig1|chr18 (2424287-2424369) |
|
516-634, gnl|xenTro1|scaffold_1382 (87322-87235) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
120-425, gnl|bosTau2|chr26 (20318366-20318061) |
|
120-425, gnl|Hg17|chr10 (112630979-112631284) |
|
120-425, gnl|Mm7|chr19 (53821981-53822286) |
| |
|
516-634, gnl|bosTau2|chr26 (20315269-20315151) |
|
516-634, gnl|canFam2|chr28 (25213488-25213577) |
|
516-634, gnl|danRer3|chr22 (41232547-41232636) |
|
516-634, gnl|dasNov1|scaffold_31540 (2833-2754) |
|
516-634, gnl|echTel1|scaffold_238124 (9195-9106) |
|
516-634, gnl|fr1|chrUn (226411340-226411251) |
|
516-634, gnl|galGal2|chr6 (25210560-25210654) |
|
516-634, gnl|hg17|chr10 (112634993-112635082) |
|
516-634, gnl|Hg17|chr10 (112634997-112635115) |
|
516-634, gnl|loxAfr1|scaffold_31454 (7824-7735) |
|
516-634, gnl|mm7|chr19 (53825680-53825764) |
|
516-634, gnl|Mm7|chr19 (53825680-53825797) |
|
516-634, gnl|monDom2|scaffold_14 (52202782-52202696) |
|
516-634, gnl|panTro1|chr8 (114560411-114560500) |
|
516-634, gnl|rheMac2|chr9 (110588183-110588272) |
|
516-634, gnl|rn3|chr1 (260400189-260400273) |
|
516-634, gnl|tetNig1|chr18 (2424287-2424369) |
|
516-634, gnl|xenTro1|scaffold_1382 (87322-87235) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
fat (0.147427) |
|
spl (0.143184) |
|
nmm (0.132802) |
|
bla (0.124347) |
|
clu (0.119646) |
|
mcp (0.170648) |
|
nje (0.16592) |
|
fat (0.147427) |
|
spl (0.143184) |
|
nmm (0.132802) |
|
bla (0.124347) |
|
clu (0.119646) |
