Non-Coding RNA Search

Ss1.1-rnmm07c_h10.5

Sequence:


               
               CTTCTCCCCTCCCCCACTTTCTTCTTTTCTTCCTTCCTTTCTTATCTGTCAATAAAATCA
CTTTGTTTCTTTCAGGTGAGATTGGAATGACATTGTTCAGCTGTGACCAGAAATTTATTT
TCCTGAGTAGATTGCCGAGAATTATGAATGAAGAGGGCCCATTTGCATCTCCTTAAATTA
TTCAGTTATCTGCTTTATTGCTCCATGCCGAAAACTTAAAATTGTTTTGTGCATTACTGT
ATTTAACTTGTTGCTTAGTTTCTACATGTTTATTTTCAGTAAATGGCTGAAAGTGTTAAA
CTGTTCCATATTTTTAGCACAATGTGCTGCATACAGTTTCCAACAAGCAAATAAGGTTAC
ATATGTACAGAATTTCACTTCAGGTTAACTAAATATTGCCTGGGTTTAGTTTTTTTGGGG
GGGTTGTTTTTTTTTCAATCTGAAATGCTTTTTATTGTTTGAAATGGAAAATAAACGATT
ATTGAACCATTTTGAATTTACCTCATTTTAAAACTCAGTTTTAATTTATTATTTGGCCTC
TTTTTAATATTAGTAAAAACAAAATGGGAGCAGTGTCTTATGCAGTGTTTAGGAATCATT
TTATATAGTACATGTACGACATTAAAACCTGTTTAAAAAGAAAACGGTACCAGCACTCAC
TTGTCCCTTGCCAATTTTTCTTGTAATTACTGTTAGAAAAATATGGGGGGGGGATATCCA
GAGTTAATTGTGTTTTAATTCTACAGCTATAGGAGCTTTGTATTGCTGAACTTTCGTCTG
GAAAAATTTCACAGTGACATTTTTAAAAGAAAATTTTTTTATCTACTGAATTCTACCAGT
GTAACCTTTTTTCTAAATAAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTCCCCTCCCCCACTTTCTTCTTTTCTTCCTTCCTTTCTTATCTGTCAATAAAATCA
CTTTGTTTCTTTCAGGTGAGATTGGAATGACATTGTTCAGCTGTGACCAGAAATTTATTT
TCCTGAGTAGATTGCCGAGAATTATGAATGAAGAGGGCCCATTTGCATCTCCTTAAATTA
TTCAGTTATCTGCTTTATTGCTCCATGCCGAAAACTTAAAATTGTTTTGTGCATTACTGT
ATTTAACTTGTTGCTTAGTTTCTACATGTTTATTTTCAGTAAATGGCTGAAAGTGTTAAA
CTGTTCCATATTTTTAGCACAATGTGCTGCATACAGTTTCCAACAAGCAAATAAGGTTAC
ATATGTACAGAATTTCACTTCAGGTTAACTAAATATTGCCTGGGTTTAGTTTTTTTGGGG
GGGTTGTTTTTTTTTCAATCTGAAATGCTTTTTATTGTTTGAAATGGAAAATAAACGATT
ATTGAACCATTTTGAATTTACCTCATTTTAAAACTCAGTTTTAATTTATTATTTGGCCTC
TTTTTAATATTAGTAAAAACAAAATGGGAGCAGTGTCTTATGCAGTGTTTAGGAATCATT
TTATATAGTACATGTACGACATTAAAACCTGTTTAAAAAGAAAACGGTACCAGCACTCAC
TTGTCCCTTGCCAATTTTTCTTGTAATTACTGTTAGAAAAATATGGGGGGGGGATATCCA
GAGTTAATTGTGTTTTAATTCTACAGCTATAGGAGCTTTGTATTGCTGAACTTTCGTCTG
GAAAAATTTCACAGTGACATTTTTAAAAGAAAATTTTTTTATCTACTGAATTCTACCAGT
GTAACCTTTTTTCTAAATAAACAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               223-338, + strand, RNAz p=0.850922

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-338, + strand, RNAz p=0.850922

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-864, gnl|bosTau2|chrX (2256906-2257757)
               

               
               4-864, gnl|Hg17|chrX (122460855-122459968)
               

               
               4-864, gnl|Mm7|chrX (36888101-36887265)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-864, gnl|bosTau2|chrX (2256906-2257757)
               

               
               4-864, gnl|Hg17|chrX (122460855-122459968)
               

               
               4-864, gnl|Mm7|chrX (36888101-36887265)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               nmm (0.132802)

	4-864, gnl\|bosTau2\|chrX (2256906-2257757)
	4-864, gnl\|Hg17\|chrX (122460855-122459968)
	4-864, gnl\|Mm7\|chrX (36888101-36887265)