Non-Coding RNA Search

Ss1.1-rnmm08c_a11.5

Sequence:


               
               CCAGATAAAGACTATTTCCTGATGGTGATACAGAATCCAACCGAATAAGCCACTCTCTTG
GCTCCCTGTGTCATTTCTTAATTTAATGCCCCTCAAGAAGAAGAGCGTGAATCATGTCAA
CTGACTGGCACGTGGAAGTCACTTTAGTGCCCTCTCAGACCCTACCAGTGACGGGTGGAC
TGTGGCTCCACCCACCCCACTAAAGCCATCCCTCTGTTAGCCAGTCACCCGATCTTCCGG
CAGAGCCCGCATTCCTCTGGTCCAAGTTTCAGAGCAAGAGCTCGTGAGAAGTCCACACCC
TGTTTGTTTCCCTCTGAATTTGAGTTCACTGTGTCGCCCTTGGAAGAGGCTGTTTTTCTT
TAACTAAAAATAACCAAAACACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGATAAAGACTATTTCCTGATGGTGATACAGAATCCAACCGAATAAGCCACTCTCTTG
GCTCCCTGTGTCATTTCTTAATTTAATGCCCCTCAAGAAGAAGAGCGTGAATCATGTCAA
CTGACTGGCACGTGGAAGTCACTTTAGTGCCCTCTCAGACCCTACCAGTGACGGGTGGAC
TGTGGCTCCACCCACCCCACTAAAGCCATCCCTCTGTTAGCCAGTCACCCGATCTTCCGG
CAGAGCCCGCATTCCTCTGGTCCAAGTTTCAGAGCAAGAGCTCGTGAGAAGTCCACACCC
TGTTTGTTTCCCTCTGAATTTGAGTTCACTGTGTCGCCCTTGGAAGAGGCTGTTTTTCTT
TAACTAAAAATAACCAAAACACCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               119-232, + strand, RNAz p=0.601257

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-232, + strand, RNAz p=0.601257

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-379, gnl|bosTau2|chr13 (47377255-47376908)
               

               
               2-379, gnl|canFam2|chr36 (23061562-23061846)
               

               
               2-379, gnl|dasNov1|scaffold_211318 (371-633)
               

               
               2-379, gnl|echTel1|scaffold_94277 (4909-4610)
               

               
               2-379, gnl|hg17|chr18 (56313732-56314037)
               

               
               2-379, gnl|Hg17|chr20 (32592043-32592417)
               

               
               2-379, gnl|loxAfr1|scaffold_87653 (1811-1506)
               

               
               2-379, gnl|mm7|chr2 (154991122-154990865)
               

               
               2-379, gnl|Mm7|chr2 (154990776-154991126)
               

               
               2-379, gnl|oryCun1|scaffold_162908 (3282-3572)
               

               
               2-379, gnl|panTro1|chr17 (53199453-53199758)
               

               
               2-379, gnl|rheMac2|chr18 (53794882-53795186)
               

               
               2-379, gnl|rn3|chr3 (41007570-41007845)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-379, gnl|bosTau2|chr13 (47377255-47376908)
               

               
               2-379, gnl|canFam2|chr36 (23061562-23061846)
               

               
               2-379, gnl|dasNov1|scaffold_211318 (371-633)
               

               
               2-379, gnl|echTel1|scaffold_94277 (4909-4610)
               

               
               2-379, gnl|hg17|chr18 (56313732-56314037)
               

               
               2-379, gnl|Hg17|chr20 (32592043-32592417)
               

               
               2-379, gnl|loxAfr1|scaffold_87653 (1811-1506)
               

               
               2-379, gnl|mm7|chr2 (154991122-154990865)
               

               
               2-379, gnl|Mm7|chr2 (154990776-154991126)
               

               
               2-379, gnl|oryCun1|scaffold_162908 (3282-3572)
               

               
               2-379, gnl|panTro1|chr17 (53199453-53199758)
               

               
               2-379, gnl|rheMac2|chr18 (53794882-53795186)
               

               
               2-379, gnl|rn3|chr3 (41007570-41007845)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)

	2-379, gnl\|bosTau2\|chr13 (47377255-47376908)
	2-379, gnl\|canFam2\|chr36 (23061562-23061846)
	2-379, gnl\|dasNov1\|scaffold_211318 (371-633)
	2-379, gnl\|echTel1\|scaffold_94277 (4909-4610)
	2-379, gnl\|hg17\|chr18 (56313732-56314037)
	2-379, gnl\|Hg17\|chr20 (32592043-32592417)
	2-379, gnl\|loxAfr1\|scaffold_87653 (1811-1506)
	2-379, gnl\|mm7\|chr2 (154991122-154990865)
	2-379, gnl\|Mm7\|chr2 (154990776-154991126)
	2-379, gnl\|oryCun1\|scaffold_162908 (3282-3572)
	2-379, gnl\|panTro1\|chr17 (53199453-53199758)
	2-379, gnl\|rheMac2\|chr18 (53794882-53795186)
	2-379, gnl\|rn3\|chr3 (41007570-41007845)