Ss1.1-rnmm08c_g11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCCGGACCCGCACGTGTGTGAGTGCTATGATGGAAGTCAAAGGGAAAAAAAAATTCAC AGGAAAAGGTACAAAGACGTCACAAGAAAAAAAACAGATTTCATAAAAACAATGGTTCTG GTTCTTCAAAGACATTCCCCCAAAAAGTTGTTAAGGAAGGTGAACCTAAAATCACATCTA AGAACTTTGAGAAGAGTGCCACAAAACCTGGGAAAAAAGGTGTGAAGCAGTTCAAGAACA AGCAGCAAGGGGATAAAATACCAAAGAACAAATTCCAGCAGGGAAATAAATTCAACAGGA AGAGAAAAATCCAGCCAGACAGTAAAAATGATGGTTCAGCAGCCAAGAAACCCAAATGGG ATGAGTTCAAAAAGAAGAAGAAAGAACTGAAGCAGAGCAGGCAACTCAGTGATAAAGCCA ACTATGACATTGTTGTTCGGGCAAAGCAGATCTGGGAGATCCTAAGAAGAAAAGATTGCA ACAAAGAAAAAAGAGTAAAGTTAATGAGTGATTTGCAGAAGTTGATTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCCGGACCCGCACGTGTGTGAGTGCTATGATGGAAGTCAAAGGGAAAAAAAAATTCAC AGGAAAAGGTACAAAGACGTCACAAGAAAAAAAACAGATTTCATAAAAACAATGGTTCTG GTTCTTCAAAGACATTCCCCCAAAAAGTTGTTAAGGAAGGTGAACCTAAAATCACATCTA AGAACTTTGAGAAGAGTGCCACAAAACCTGGGAAAAAAGGTGTGAAGCAGTTCAAGAACA AGCAGCAAGGGGATAAAATACCAAAGAACAAATTCCAGCAGGGAAATAAATTCAACAGGA AGAGAAAAATCCAGCCAGACAGTAAAAATGATGGTTCAGCAGCCAAGAAACCCAAATGGG ATGAGTTCAAAAAGAAGAAGAAAGAACTGAAGCAGAGCAGGCAACTCAGTGATAAAGCCA ACTATGACATTGTTGTTCGGGCAAAGCAGATCTGGGAGATCCTAAGAAGAAAAGATTGCA ACAAAGAAAAAAGAGTAAAGTTAATGAGTGATTTGCAGAAGTTGATTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 116-335, gnl|bosTau2|chr8 (16995819-16996038) | |
| 116-335, gnl|Hg17|chr9 (2827400-2827178) | |
| 116-335, gnl|Mm7|chr19 (27126038-27125819) | |
| 336-469, gnl|bosTau2|chr8 (16999149-16999282) | |
| 336-469, gnl|canFam2|chr1 (94493671-94493581) | |
| 336-469, gnl|canFam2|chr1 (94493532-94493631) | |
| 336-469, gnl|danRer3|chr10 (1206703-1206801) | |
| 336-469, gnl|danRer3|chr10 (1206850-1206748) | |
| 336-469, gnl|dasNov1|scaffold_64696 (1882-1972) | |
| 336-469, gnl|dasNov1|scaffold_64696 (2021-1922) | |
| 336-469, gnl|echTel1|scaffold_195816 (1199-1116) | |
| 336-469, gnl|echTel1|scaffold_195816 (1083-1159) | |
| 336-469, gnl|fr1|chrUn (202359408-202359309) | |
| 336-469, gnl|fr1|chrUn (202359222-202359324) | |
| 336-469, gnl|galGal2|chrZ_random (930743-930829) | |
| 336-469, gnl|hg17|chr14 (51823566-51823656) | |
| 336-469, gnl|hg17|chr9 (2824029-2824128) | |
| 336-469, gnl|Hg17|chr9 (2824164-2824031) | |
| 336-469, gnl|loxAfr1|scaffold_21118 (13157-13058) | |
| 336-469, gnl|loxAfr1|scaffold_72510 (4201-4291) | |
| 336-469, gnl|mm7|chr19 (27124232-27124331) | |
| 336-469, gnl|Mm7|chr19 (27124367-27124234) | |
| 336-469, gnl|mm7|chrX (70659294-70659206) | |
| 336-469, gnl|monDom2|scaffold_5 (114295867-114295957) | |
| 336-469, gnl|monDom2|scaffold_5 (114296006-114295907) | |
| 336-469, gnl|oryCun1|scaffold_200158 (44840-44741) | |
| 336-469, gnl|oryCun1|scaffold_203692 (23899-23812) | |
| 336-469, gnl|panTro1|chr11 (2788827-2788926) | |
| 336-469, gnl|panTro1|chr15_random (10550888-10550978) | |
| 336-469, gnl|rheMac2|chr15 (74405032-74405122) | |
| 336-469, gnl|rheMac2|chr15 (74405171-74405072) | |
| 336-469, gnl|rn3|chr1 (231109444-231109543) | |
| 336-469, gnl|rn3|chrX (157393102-157393012) | |
| 336-469, gnl|xenTro1|scaffold_52 (2934365-2934452) | |
| 336-469, gnl|xenTro1|scaffold_52 (2934501-2934402) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 116-335, gnl|bosTau2|chr8 (16995819-16996038) | |
| 116-335, gnl|Hg17|chr9 (2827400-2827178) | |
| 116-335, gnl|Mm7|chr19 (27126038-27125819) | |
| 336-469, gnl|bosTau2|chr8 (16999149-16999282) | |
| 336-469, gnl|canFam2|chr1 (94493671-94493581) | |
| 336-469, gnl|canFam2|chr1 (94493532-94493631) | |
| 336-469, gnl|danRer3|chr10 (1206703-1206801) | |
| 336-469, gnl|danRer3|chr10 (1206850-1206748) | |
| 336-469, gnl|dasNov1|scaffold_64696 (1882-1972) | |
| 336-469, gnl|dasNov1|scaffold_64696 (2021-1922) | |
| 336-469, gnl|echTel1|scaffold_195816 (1199-1116) | |
| 336-469, gnl|echTel1|scaffold_195816 (1083-1159) | |
| 336-469, gnl|fr1|chrUn (202359408-202359309) | |
| 336-469, gnl|fr1|chrUn (202359222-202359324) | |
| 336-469, gnl|galGal2|chrZ_random (930743-930829) | |
| 336-469, gnl|hg17|chr14 (51823566-51823656) | |
| 336-469, gnl|hg17|chr9 (2824029-2824128) | |
| 336-469, gnl|Hg17|chr9 (2824164-2824031) | |
| 336-469, gnl|loxAfr1|scaffold_21118 (13157-13058) | |
| 336-469, gnl|loxAfr1|scaffold_72510 (4201-4291) | |
| 336-469, gnl|mm7|chr19 (27124232-27124331) | |
| 336-469, gnl|Mm7|chr19 (27124367-27124234) | |
| 336-469, gnl|mm7|chrX (70659294-70659206) | |
| 336-469, gnl|monDom2|scaffold_5 (114295867-114295957) | |
| 336-469, gnl|monDom2|scaffold_5 (114296006-114295907) | |
| 336-469, gnl|oryCun1|scaffold_200158 (44840-44741) | |
| 336-469, gnl|oryCun1|scaffold_203692 (23899-23812) | |
| 336-469, gnl|panTro1|chr11 (2788827-2788926) | |
| 336-469, gnl|panTro1|chr15_random (10550888-10550978) | |
| 336-469, gnl|rheMac2|chr15 (74405032-74405122) | |
| 336-469, gnl|rheMac2|chr15 (74405171-74405072) | |
| 336-469, gnl|rn3|chr1 (231109444-231109543) | |
| 336-469, gnl|rn3|chrX (157393102-157393012) | |
| 336-469, gnl|xenTro1|scaffold_52 (2934365-2934452) | |
| 336-469, gnl|xenTro1|scaffold_52 (2934501-2934402) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| nmm (0.132802) |