Non-Coding RNA Search

Ss1.1-rnmm08c_i22.5

Sequence:


               
               GCCAAGACCCCAGGCTCCATGGCGCAGAAACCAATCAGCACGGCAGCGGCAGAGCGCATG
AACCTGGTGGCCCAGGACGAGATCTGGAAATACCGCCTGAAGGCTGAAAACGAAGCACGG
CAAAACTGGGCCCAGAACTGGGGATTTTTAACAACCCCCCTCAAGGAGCTGATCAAGTGT
GAAGAAGAAGCCAGCACCCCCAAGCCCAGAATCGAGCTCCCCGAGCGGTTCCGCATCCGG
CCAGTGACCCCAGTGGAGAAGTATATCCAGGTGCTTCCATCCCCCCCAGTCCCAAAGACG
ACCCAGGGCTTCATCGGCTGGAGGTCTGGGGTGCCAGGCCTGAACAAGTGTCTGGAGCAT
GACTGTGAGATCAGGAGCTGCAAAGGGGCGTATGCCAAGGAGCTAAACTGGCCCAAGCAG
GGCATACACTGATCCAGACAGAGACGCAGCCCTGGGCAAAGAAAGGGTGGACCACCAAGC
CCTGGAGCCCAGCCCAGGAAAAGAGGAGGCCGCCAGCCTCCCCGTGAAGACAGAGCCCCC
TCCACGTTTGCTCATAGGATGTTGCTGCAAAGAACACAAAACAGCCCCTAGATGCTCTCA
ATTCATCGATGCCTCCCTTCCAGAATATGCTTGTAACACATTCACTCTTGGCTAATGCAA
TGGAAAAGGCAAAGCAGATTCTCTGAATTTTTTTTACGACTTTGGGAATGCCTAGGTATA
GCTTTATATATTTAAAAACAATAAAGCATGATCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAAGACCCCAGGCTCCATGGCGCAGAAACCAATCAGCACGGCAGCGGCAGAGCGCATG
AACCTGGTGGCCCAGGACGAGATCTGGAAATACCGCCTGAAGGCTGAAAACGAAGCACGG
CAAAACTGGGCCCAGAACTGGGGATTTTTAACAACCCCCCTCAAGGAGCTGATCAAGTGT
GAAGAAGAAGCCAGCACCCCCAAGCCCAGAATCGAGCTCCCCGAGCGGTTCCGCATCCGG
CCAGTGACCCCAGTGGAGAAGTATATCCAGGTGCTTCCATCCCCCCCAGTCCCAAAGACG
ACCCAGGGCTTCATCGGCTGGAGGTCTGGGGTGCCAGGCCTGAACAAGTGTCTGGAGCAT
GACTGTGAGATCAGGAGCTGCAAAGGGGCGTATGCCAAGGAGCTAAACTGGCCCAAGCAG
GGCATACACTGATCCAGACAGAGACGCAGCCCTGGGCAAAGAAAGGGTGGACCACCAAGC
CCTGGAGCCCAGCCCAGGAAAAGAGGAGGCCGCCAGCCTCCCCGTGAAGACAGAGCCCCC
TCCACGTTTGCTCATAGGATGTTGCTGCAAAGAACACAAAACAGCCCCTAGATGCTCTCA
ATTCATCGATGCCTCCCTTCCAGAATATGCTTGTAACACATTCACTCTTGGCTAATGCAA
TGGAAAAGGCAAAGCAGATTCTCTGAATTTTTTTTACGACTTTGGGAATGCCTAGGTATA
GCTTTATATATTTAAAAACAATAAAGCATGATCTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61822491|ref|XP_581613.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61822491|ref|XP_581613.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               268-726, gnl|bosTau2|chr13 (39485169-39484714)
               

               
               268-726, gnl|Hg17|chr20 (56169120-56169563)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               268-726, gnl|bosTau2|chr13 (39485169-39484714)
               

               
               268-726, gnl|Hg17|chr20 (56169120-56169563)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.265604)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               ova (0.129132)

	268-726, gnl\|bosTau2\|chr13 (39485169-39484714)
	268-726, gnl\|Hg17\|chr20 (56169120-56169563)