Non-Coding RNA Search

Ss1.1-rnmm08c_k17.5

Sequence:


               
               TGGATCAAGAAGCAAGCTGTGACCAAGATCCAAAAGAGACACCCCTCTTAAGGGGTTAAA
AGGATAAGATGAAGGTTTTAATCCTGACTGGGCTCATCCTGATCTTTGCCATTGGTTTCC
CGGTCAGTGAGAGTCAGCAACCACGGCGCCGGGCAACAGGAAAGACAGTCAAGAGTCGAC
CAGTGCAGAGTTCCCCTGTCAGGATATTGCAAAGCCGATCTTCATCCACCCAGATCATTA
GGAAACCTCAAACCTCTTCTCGTGCCTCTGTCACACCTGTGCTGACTAAAAAAGCAACTA
GCCAATTATCTTCAAATCCAAGGCCATCAAGTAAAAAGAAAAAGCCATCACAAAGACAAA
ATCTACAAGTCAAGCCTAAACAAAGTACATTGACCTCTGCCAAGGGAGGGCTGACTCCTC
ATTCCTCTAGTCTAACAGGAAGAAATGTTCCACTGAAGGCCAGCAGAACTCTGAAACAGC
CAAAAAAAGGTCAAAAGACAACTGCCAAGAAACAGTCAAAAGGGACTGCAGCAACACCAA
AATCATCTTCACCCATAAAGAAAAGTCTAAATGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATCAAGAAGCAAGCTGTGACCAAGATCCAAAAGAGACACCCCTCTTAAGGGGTTAAA
AGGATAAGATGAAGGTTTTAATCCTGACTGGGCTCATCCTGATCTTTGCCATTGGTTTCC
CGGTCAGTGAGAGTCAGCAACCACGGCGCCGGGCAACAGGAAAGACAGTCAAGAGTCGAC
CAGTGCAGAGTTCCCCTGTCAGGATATTGCAAAGCCGATCTTCATCCACCCAGATCATTA
GGAAACCTCAAACCTCTTCTCGTGCCTCTGTCACACCTGTGCTGACTAAAAAAGCAACTA
GCCAATTATCTTCAAATCCAAGGCCATCAAGTAAAAAGAAAAAGCCATCACAAAGACAAA
ATCTACAAGTCAAGCCTAAACAAAGTACATTGACCTCTGCCAAGGGAGGGCTGACTCCTC
ATTCCTCTAGTCTAACAGGAAGAAATGTTCCACTGAAGGCCAGCAGAACTCTGAAACAGC
CAAAAAAAGGTCAAAAGACAACTGCCAAGAAACAGTCAAAAGGGACTGCAGCAACACCAA
AATCATCTTCACCCATAAAGAAAAGTCTAAATGTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               386-505, - strand, RNAz p=0.557934

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               386-505, - strand, RNAz p=0.557934

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               124-576, gnl|bosTau2|chr6 (45896539-45896090)
               

               
               124-576, gnl|Hg17|chr4 (71343245-71343765)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-576, gnl|bosTau2|chr6 (45896539-45896090)
               

               
               124-576, gnl|Hg17|chr4 (71343245-71343765)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.265604)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)

	124-576, gnl\|bosTau2\|chr6 (45896539-45896090)
	124-576, gnl\|Hg17\|chr4 (71343245-71343765)