Ss1.1-rnmm09c_p14.5
|
TACACACTGGACAAATAACAGAGGAGGATTTAGAAGAAGAACACATCAAGCGAGGGAAGA
GAAAAAGGATCTCCTCGGTGATGTATGACAGTGATGAGAGTGATGACAGTGATATCCTAG
TTAGAAAAGTGGGCATTAAGCGTCCACGTAGAGTGGTTGAAGATGAATGTTCTTCAGTGG
AGATGGAGCAAAAAAACCCTGAAAAAGCATTAGCCGCAAAAAAACAAGAACAGCTCCAGA
AATTGAAAGAACTCTCAAAACAACGATCTCGTCAGAGACGCACTAGTAGTAGAGATTTGG
AGGACTCTGAAAAGGAATCTTGCTCAAGCAGTGATGAAAATGAGGAGGAGGAGGAGGAGG
AGAATTATGAAGATGGAGATGATTATATCATTGATGACTTTGTAGTGAAAGATGAGGAGG
GTGATGAAGAGAACAAAAGCCAACAAGGAGAAAAACTGACCACATCACAACTGAAATTAG
TAAAACAGAATTCTCTTTGTAAGTTAAATATCAAGAGAATGTTTAATGATGATATATTAC
AAATATCAAATCAGCCTTTTACTATCATATTCTCTAAATCATTGATTAGGAACTTTGCTT
TTGTTTTCAGGTTACATTATCTATCTAACAATAGTTTATTCTAGTGGT------------
------------------------------------------------------------
------------------------------------AAATATGTTTATTAATTAACTGAT
TTAAAATAAGTCATAATGTGATAAACTCATTACATGTTAACATAGATA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TACACACTGGACAAATAACAGAGGAGGATTTAGAAGAAGAACACATCAAGCGAGGGAAGA
GAAAAAGGATCTCCTCGGTGATGTATGACAGTGATGAGAGTGATGACAGTGATATCCTAG
TTAGAAAAGTGGGCATTAAGCGTCCACGTAGAGTGGTTGAAGATGAATGTTCTTCAGTGG
AGATGGAGCAAAAAAACCCTGAAAAAGCATTAGCCGCAAAAAAACAAGAACAGCTCCAGA
AATTGAAAGAACTCTCAAAACAACGATCTCGTCAGAGACGCACTAGTAGTAGAGATTTGG
AGGACTCTGAAAAGGAATCTTGCTCAAGCAGTGATGAAAATGAGGAGGAGGAGGAGGAGG
AGAATTATGAAGATGGAGATGATTATATCATTGATGACTTTGTAGTGAAAGATGAGGAGG
GTGATGAAGAGAACAAAAGCCAACAAGGAGAAAAACTGACCACATCACAACTGAAATTAG
TAAAACAGAATTCTCTTTGTAAGTTAAATATCAAGAGAATGTTTAATGATGATATATTAC
AAATATCAAATCAGCCTTTTACTATCATATTCTCTAAATCATTGATTAGGAACTTTGCTT
TTGTTTTCAGGTTACATTATCTATCTAACAATAGTTTATTCTAGTGGT------------
------------------------------------------------------------
------------------------------------AAATATGTTTATTAATTAACTGAT
TTAAAATAAGTCATAATGTGATAAACTCATTACATGTTAACATAGATA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
2-310, gnl|bosTau2|chr11 (28027174-28026866) |
|
2-310, gnl|Hg17|chr11 (95757074-95756766) |
|
2-310, gnl|Mm7|chrUn_random (1217023-1217334) |
| |
|
334-648, gnl|bosTau2|chr11 (28026334-28026009) |
|
334-648, gnl|canFam2|chr21 (7791422-7790926) |
|
334-648, gnl|dasNov1|scaffold_2959 (4761-4292) |
|
334-648, gnl|echTel1|scaffold_274547 (5093-4648) |
|
334-648, gnl|hg17|chr11 (95755909-95756410) |
|
334-648, gnl|Hg17|chr11 (95756227-95755925) |
|
334-648, gnl|loxAfr1|scaffold_359 (22038-21559) |
|
334-648, gnl|mm7|chrUn_random (1218130-1217677) |
|
334-648, gnl|Mm7|chrUn_random (1217812-1218112) |
|
334-648, gnl|monDom2|scaffold_15 (681501-681017) |
|
334-648, gnl|oryCun1|scaffold_63175 (931-430) |
|
334-648, gnl|panTro1|chr9 (97687249-97687750) |
|
334-648, gnl|rheMac2|chr14 (94930807-94931306) |
|
334-648, gnl|rn3|chr8 (10124498-10124055) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-310, gnl|bosTau2|chr11 (28027174-28026866) |
|
2-310, gnl|Hg17|chr11 (95757074-95756766) |
|
2-310, gnl|Mm7|chrUn_random (1217023-1217334) |
| |
|
334-648, gnl|bosTau2|chr11 (28026334-28026009) |
|
334-648, gnl|canFam2|chr21 (7791422-7790926) |
|
334-648, gnl|dasNov1|scaffold_2959 (4761-4292) |
|
334-648, gnl|echTel1|scaffold_274547 (5093-4648) |
|
334-648, gnl|hg17|chr11 (95755909-95756410) |
|
334-648, gnl|Hg17|chr11 (95756227-95755925) |
|
334-648, gnl|loxAfr1|scaffold_359 (22038-21559) |
|
334-648, gnl|mm7|chrUn_random (1218130-1217677) |
|
334-648, gnl|Mm7|chrUn_random (1217812-1218112) |
|
334-648, gnl|monDom2|scaffold_15 (681501-681017) |
|
334-648, gnl|oryCun1|scaffold_63175 (931-430) |
|
334-648, gnl|panTro1|chr9 (97687249-97687750) |
|
334-648, gnl|rheMac2|chr14 (94930807-94931306) |
|
334-648, gnl|rn3|chr8 (10124498-10124055) |
|
isp (0.150376) |
|
nmm (0.132802) |
|
med (0.116252) |
|
ecc (0.115035) |
|
isp (0.150376) |
|
nmm (0.132802) |
|
med (0.116252) |
|
ecc (0.115035) |
