Non-Coding RNA Search

Ss1.1-rnmm09c_p23.5

Sequence:


               
               GGGGATGGGAGCAGTCGTCGCTTCTCCGGGCCATTTAAGCTGCTGCGTCTGAAGGAAGCA
GCCAGTGTGACCCCCGATTGTCCCAGACAGCACCCGGCTCTGTGGGCGCCGAGCTCCACG
ACCGAATGCTCCCAATATCCGACCCGGGGACGCTTGGCCTCGGGCCCTCGCCGAACGCGC
CCGGTTATTAACTGCGGGCTGCGGGCGGGGGCCTGGCAGCACCGTCCCGAGGTGGGCCCT
GGCCCGGTCTGTGCTTGCAGGCGTTGGTGGGGGCCGCACCCACTCCCGGCTGCCCCGGCC
ACTCCTGCAGCAACATGGTCTGGAACCTTTGTTTCCTGCAGACAGTCTGACGATGTGAGA
GACGTGTCCCTGACGCGAGGCGGCAGCGACAGAGGGCTGTGAGGAGGAGGCCCCTGGACC
CTTTGAGGGTCAGCTCAGGGTCCCCAGGCGCTGGGAGCCCCGGGCGGCGGCTTTTCTGCG
CGGGGGCTGGGCATGGCTCGAGTGATAAGCTGGTGCCTGAGCTCTCCGGAGCAATTCGGT
TCTGATCTGACATCAGATCAGCAGCTCCAACAAGAGTCCTTCACCCGAAGCTTTTTTTAA
TGTCTTGTAATTTCAGAGGTCCTTGTGTTCTGGAAACCAGAGATGGGTTTTGCATCTGTT
TGTTCTCCCTCTCAGGCCACCACAAAGGGTTTCATAGAGTAAAGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGATGGGAGCAGTCGTCGCTTCTCCGGGCCATTTAAGCTGCTGCGTCTGAAGGAAGCA
GCCAGTGTGACCCCCGATTGTCCCAGACAGCACCCGGCTCTGTGGGCGCCGAGCTCCACG
ACCGAATGCTCCCAATATCCGACCCGGGGACGCTTGGCCTCGGGCCCTCGCCGAACGCGC
CCGGTTATTAACTGCGGGCTGCGGGCGGGGGCCTGGCAGCACCGTCCCGAGGTGGGCCCT
GGCCCGGTCTGTGCTTGCAGGCGTTGGTGGGGGCCGCACCCACTCCCGGCTGCCCCGGCC
ACTCCTGCAGCAACATGGTCTGGAACCTTTGTTTCCTGCAGACAGTCTGACGATGTGAGA
GACGTGTCCCTGACGCGAGGCGGCAGCGACAGAGGGCTGTGAGGAGGAGGCCCCTGGACC
CTTTGAGGGTCAGCTCAGGGTCCCCAGGCGCTGGGAGCCCCGGGCGGCGGCTTTTCTGCG
CGGGGGCTGGGCATGGCTCGAGTGATAAGCTGGTGCCTGAGCTCTCCGGAGCAATTCGGT
TCTGATCTGACATCAGATCAGCAGCTCCAACAAGAGTCCTTCACCCGAAGCTTTTTTTAA
TGTCTTGTAATTTCAGAGGTCCTTGTGTTCTGGAAACCAGAGATGGGTTTTGCATCTGTT
TGTTCTCCCTCTCAGGCCACCACAAAGGGTTTCATAGAGTAAAGCCAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               467-690, gnl|bosTau2|chr13 (36145860-36145637)
               

               
               467-690, gnl|Hg17|chr20 (60211324-60211559)
               

               
               467-690, gnl|Mm7|chr2 (180587844-180588060)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               467-690, gnl|bosTau2|chr13 (36145860-36145637)
               

               
               467-690, gnl|Hg17|chr20 (60211324-60211559)
               

               
               467-690, gnl|Mm7|chr2 (180587844-180588060)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	467-690, gnl\|bosTau2\|chr13 (36145860-36145637)
	467-690, gnl\|Hg17\|chr20 (60211324-60211559)
	467-690, gnl\|Mm7\|chr2 (180587844-180588060)

	fcc (0.197785)
	nep (0.183925)
	ill (0.175593)
	ton (0.1755)
	eye (0.170503)
	nje (0.16592)
	cag (0.151194)
	nmm (0.132802)
	ute (0.132784)
	cov (0.132153)
	ecc (0.115035)