Non-Coding RNA Search

Ss1.1-rnmm09c_p6.5

Sequence:


               
               TGATGATAAAAATGTTTTTATCACCAGATGTGAAAGAAGCTGCCTGTTTACCGATCCATT
AAATAATGCCCATTTTCATATCAAAAGTCCAACACCAATTCAGCAAAAAATAAGTGTATT
ACTGACTATAAAGAAATTTATTCTGAAATAGACTTGGTTTTTTTTTCTTAAAGAGGAAAA
AAATGGCTTCATAGCAATTATATACCCAAATGGGTCTGCCCGGGCCTTTTAATTCCCATT
AGCTCTGGAATCTTGATAAGCATAACTAGGCCAGCCCAGCTGCCACATTCTTTCCAAGGA
TCCCCAAAGTATCGATCCAGATGCCACATGGAACAACGTCAGGCTAGTGAATCTGTGGTT
CTGAAATTCTTTCATATGTTGCAGAACTGAACCTTCCCGTCCCAAAAGAGCTCCCGTCTT
CTCATTGGTGTGTCTATTTGTGGACTTGATTCTTGATTCTTGCAAAGTACTGTTTTGTGC
AGTTCAAGTTTCGTACAAATAAAAGATACATAAGTATATATGTATATATATGTGTGTGTG
------------TGTGTGTGTGTGTGACTCACACACACACACATTACACACACGATAGTG
TATATAATATAATGGGAATCACTGAACTGGCAAATTATTCCGGCAATATATGCTTTCAGT
ACTTTGGTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGATAAAAATGTTTTTATCACCAGATGTGAAAGAAGCTGCCTGTTTACCGATCCATT
AAATAATGCCCATTTTCATATCAAAAGTCCAACACCAATTCAGCAAAAAATAAGTGTATT
ACTGACTATAAAGAAATTTATTCTGAAATAGACTTGGTTTTTTTTTCTTAAAGAGGAAAA
AAATGGCTTCATAGCAATTATATACCCAAATGGGTCTGCCCGGGCCTTTTAATTCCCATT
AGCTCTGGAATCTTGATAAGCATAACTAGGCCAGCCCAGCTGCCACATTCTTTCCAAGGA
TCCCCAAAGTATCGATCCAGATGCCACATGGAACAACGTCAGGCTAGTGAATCTGTGGTT
CTGAAATTCTTTCATATGTTGCAGAACTGAACCTTCCCGTCCCAAAAGAGCTCCCGTCTT
CTCATTGGTGTGTCTATTTGTGGACTTGATTCTTGATTCTTGCAAAGTACTGTTTTGTGC
AGTTCAAGTTTCGTACAAATAAAAGATACATAAGTATATATGTATATATATGTGTGTGTG
------------TGTGTGTGTGTGTGACTCACACACACACACATTACACACACGATAGTG
TATATAATATAATGGGAATCACTGAACTGGCAAATTATTCCGGCAATATATGCTTTCAGT
ACTTTGGTGACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               459-660, + strand, RNAz p=0.987376

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               459-660, + strand, RNAz p=0.987376

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               526-616, - strand, RNAmicro p=0.993822

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               526-616, - strand, RNAmicro p=0.993822

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               459-648, UI-E-CR1-aee-a-08-0-UI.r1 UI-E-CR1 Homo sapiens cDNA clone 
(gb|BM707261.1|), blast E-value=4e-18, identity=93.94%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               459-648, UI-E-CR1-aee-a-08-0-UI.r1 UI-E-CR1 Homo sapiens cDNA clone 
(gb|BM707261.1|), blast E-value=4e-18, identity=93.94%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-660, gnl|bosTau2|chr28 (7648076-7648736)
               

               
               4-660, gnl|Hg17|chr1 (236398657-236399292)
               

               
               4-660, gnl|Mm7|chr13 (9790584-9789958)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-660, gnl|bosTau2|chr28 (7648076-7648736)
               

               
               4-660, gnl|Hg17|chr1 (236398657-236399292)
               

               
               4-660, gnl|Mm7|chr13 (9790584-9789958)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	4-660, gnl\|bosTau2\|chr28 (7648076-7648736)
	4-660, gnl\|Hg17\|chr1 (236398657-236399292)
	4-660, gnl\|Mm7\|chr13 (9790584-9789958)