Ss1.1-rnmm10c_i13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCCGCCGGGTTTCCGCACCCGCACCCCGCCTTCTACCCATACGGCCAGTACCAGTTCGG GGACCCGTCCCGTCCCAAGAACGCGACCCGGGAGAGCACTAGCACACTCAAGGCCTGGCT GAACGAGCACCGCAAGAACCCCTACCCCACCAAGGGCGAGAAGATCATGCTGGCCATCAT CACCAAGATGACCCTCACCCAGGTGTCCACCTGGTTCGCCAACGCGCGCCGGCGCCTCAA GAAGGAGAACAAGATGACATGGGCGCCCCGCAGCCGCACCGACGAGGAGGGCAACGCTTA CGGGAGCGAGCGCGAGGAGGAGGACGAAGAGGAAGATGAAGAAGACAGCACACGCGAACT GGAGCTGGAGGAGGAGGAGCTCGGGGGGGAGGAGGAGGACACTGGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCCGCCGGGTTTCCGCACCCGCACCCCGCCTTCTACCCATACGGCCAGTACCAGTTCGG GGACCCGTCCCGTCCCAAGAACGCGACCCGGGAGAGCACTAGCACACTCAAGGCCTGGCT GAACGAGCACCGCAAGAACCCCTACCCCACCAAGGGCGAGAAGATCATGCTGGCCATCAT CACCAAGATGACCCTCACCCAGGTGTCCACCTGGTTCGCCAACGCGCGCCGGCGCCTCAA GAAGGAGAACAAGATGACATGGGCGCCCCGCAGCCGCACCGACGAGGAGGGCAACGCTTA CGGGAGCGAGCGCGAGGAGGAGGACGAAGAGGAAGATGAAGAAGACAGCACACGCGAACT GGAGCTGGAGGAGGAGGAGCTCGGGGGGGAGGAGGAGGACACTGGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 121-255, - strand, RNAz p=0.652723 | |
| 142-261, - strand, RNAz p=0.549171 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 121-255, - strand, RNAz p=0.652723 | |
| 142-261, - strand, RNAz p=0.549171 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-408, gnl|bosTau2|chrX (46106801-46106394) | |
| 1-408, gnl|Hg17|chr16 (52876976-52876569) | |
| 1-408, gnl|Mm7|chr8 (90393452-90393045) | |
| 17-364, gnl|bosTau2|chr20 (41248810-41249154) | |
| 17-364, gnl|canFam2|chr34 (12546762-12546472) | |
| 17-364, gnl|danRer3|chr9 (6224128-6223849) | |
| 17-364, gnl|dasNov1|scaffold_11709 (14713-14423) | |
| 17-364, gnl|echTel1|scaffold_307479 (5468-5179) | |
| 17-364, gnl|fr1|chrUn (132309241-132308958) | |
| 17-364, gnl|galGal2|chr2 (87031249-87031533) | |
| 17-364, gnl|hg17|chr13 (24217393-24217684) | |
| 17-364, gnl|Hg17|chr5 (3652396-3652740) | |
| 17-364, gnl|loxAfr1|scaffold_134596 (386-675) | |
| 17-364, gnl|mm7|chr13 (68889572-68889284) | |
| 17-364, gnl|Mm7|chr13 (68889503-68889159) | |
| 17-364, gnl|monDom2|scaffold_4 (20166215-20166508) | |
| 17-364, gnl|oryCun1|scaffold_114651 (3518-3228) | |
| 17-364, gnl|panTro1|chr14 (23388018-23388309) | |
| 17-364, gnl|rheMac2|chr6 (3500741-3501031) | |
| 17-364, gnl|rn3|chr17 (1394346-1394634) | |
| 17-364, gnl|tetNig1|chrUn_random (168277140-168277426) | |
| 17-364, gnl|xenTro1|scaffold_272 (1177646-1177937) | |
| 44-333, gnl|bosTau2|chr18 (24378111-24377822) | |
| 44-333, gnl|Hg17|chr16 (53523980-53524269) | |
| 44-333, gnl|Mm7|chr8 (90952856-90953145) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-408, gnl|bosTau2|chrX (46106801-46106394) | |
| 1-408, gnl|Hg17|chr16 (52876976-52876569) | |
| 1-408, gnl|Mm7|chr8 (90393452-90393045) | |
| 17-364, gnl|bosTau2|chr20 (41248810-41249154) | |
| 17-364, gnl|canFam2|chr34 (12546762-12546472) | |
| 17-364, gnl|danRer3|chr9 (6224128-6223849) | |
| 17-364, gnl|dasNov1|scaffold_11709 (14713-14423) | |
| 17-364, gnl|echTel1|scaffold_307479 (5468-5179) | |
| 17-364, gnl|fr1|chrUn (132309241-132308958) | |
| 17-364, gnl|galGal2|chr2 (87031249-87031533) | |
| 17-364, gnl|hg17|chr13 (24217393-24217684) | |
| 17-364, gnl|Hg17|chr5 (3652396-3652740) | |
| 17-364, gnl|loxAfr1|scaffold_134596 (386-675) | |
| 17-364, gnl|mm7|chr13 (68889572-68889284) | |
| 17-364, gnl|Mm7|chr13 (68889503-68889159) | |
| 17-364, gnl|monDom2|scaffold_4 (20166215-20166508) | |
| 17-364, gnl|oryCun1|scaffold_114651 (3518-3228) | |
| 17-364, gnl|panTro1|chr14 (23388018-23388309) | |
| 17-364, gnl|rheMac2|chr6 (3500741-3501031) | |
| 17-364, gnl|rn3|chr17 (1394346-1394634) | |
| 17-364, gnl|tetNig1|chrUn_random (168277140-168277426) | |
| 17-364, gnl|xenTro1|scaffold_272 (1177646-1177937) | |
| 44-333, gnl|bosTau2|chr18 (24378111-24377822) | |
| 44-333, gnl|Hg17|chr16 (53523980-53524269) | |
| 44-333, gnl|Mm7|chr8 (90952856-90953145) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| nmm (0.132802) |