Ss1.1-rnmm10c_m6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGAATTATTGGAAGCTAGATTTACAGGAGTTGCAAGTGGGAGCACAGGGAGCACGGGC AGTTGCAGTGTTGGAGCTAAAGCCTCAACAAATAATGAAAGCTCTAATCACAGTTTTGGA AGCTTGGGATCTTTAAGTGACAAAGAATCAGAGACACCAGAGAAGAAGCAATCAGAATCA TCTAGAGGAAGAAAGAGAAAAGCAGAAAACCAGAATGAAAGTAGTCAGGGAAAAAGTATT GGGGGACGTGGCCACAAAATTAGCGACTATTTTGAATACCAAGGTGGGAATGGCTCAAGT CCAGTAAGAGGCATACCTCCTGCAATCCGTTCTCCTCAGAGTTCACATTCACATTCCACT CCTTCCTCATCTGTTCGACCGAATAGCCCTTCTCCTACTGCGTTAGCTTTTGGGGACCAC CCTATTGTACAACCAAAGCAGTTATCCTTTAAAATAACTCAGACTGATCTTACAATGCTG AAATTAGCAGCATTAGAAAGTAATAAAAACCAGGACCTGGAAAAGAAGGAAGGTCGTATA GATGACTTGCTCAGGGCTAACTGTGATCTCAGACGGCAGATAGATGAACAACAAAAATTA CTTGAAAAATACAAAGAACGATTAAATAAATGTATATCAATGAGCAAGAAACTGCTTATT GAAAAGAGTACACAAGAAAAATTGTCAAGCCGAGAGAAGAGTATGCAAGACCGATTACGC CTTGGGCATTTTACAACAGTTAGACATGGTGCTTCATTTACTGAACAATGGACAGATGGT TTGGCATTTCAGAATCTCGTAAAGCAACAAGAATGGGTGAATCAGCAAAGGGAAGATATT GAAAGGCAAAGGAAACTTCTAGCCAAACGCAAACCTCCCACAGCTAATAATTCTCAGGCA CCCTCTACCAATTCTGAACCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGAATTATTGGAAGCTAGATTTACAGGAGTTGCAAGTGGGAGCACAGGGAGCACGGGC AGTTGCAGTGTTGGAGCTAAAGCCTCAACAAATAATGAAAGCTCTAATCACAGTTTTGGA AGCTTGGGATCTTTAAGTGACAAAGAATCAGAGACACCAGAGAAGAAGCAATCAGAATCA TCTAGAGGAAGAAAGAGAAAAGCAGAAAACCAGAATGAAAGTAGTCAGGGAAAAAGTATT GGGGGACGTGGCCACAAAATTAGCGACTATTTTGAATACCAAGGTGGGAATGGCTCAAGT CCAGTAAGAGGCATACCTCCTGCAATCCGTTCTCCTCAGAGTTCACATTCACATTCCACT CCTTCCTCATCTGTTCGACCGAATAGCCCTTCTCCTACTGCGTTAGCTTTTGGGGACCAC CCTATTGTACAACCAAAGCAGTTATCCTTTAAAATAACTCAGACTGATCTTACAATGCTG AAATTAGCAGCATTAGAAAGTAATAAAAACCAGGACCTGGAAAAGAAGGAAGGTCGTATA GATGACTTGCTCAGGGCTAACTGTGATCTCAGACGGCAGATAGATGAACAACAAAAATTA CTTGAAAAATACAAAGAACGATTAAATAAATGTATATCAATGAGCAAGAAACTGCTTATT GAAAAGAGTACACAAGAAAAATTGTCAAGCCGAGAGAAGAGTATGCAAGACCGATTACGC CTTGGGCATTTTACAACAGTTAGACATGGTGCTTCATTTACTGAACAATGGACAGATGGT TTGGCATTTCAGAATCTCGTAAAGCAACAAGAATGGGTGAATCAGCAAAGGGAAGATATT GAAAGGCAAAGGAAACTTCTAGCCAAACGCAAACCTCCCACAGCTAATAATTCTCAGGCA CCCTCTACCAATTCTGAACCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-117, gnl|bosTau2|chr2 (16102664-16102778) | |
| 1-117, gnl|Hg17|chr2 (171799836-171799722) | |
| 1-117, gnl|Mm7|chr2 (70625667-70625554) | |
| 555-666, gnl|bosTau2|chr19 (39380628-39380739) | |
| 555-666, gnl|canFam2|chr9 (13891120-13891263) | |
| 555-666, gnl|danRer3|chr3 (11695609-11695461) | |
| 555-666, gnl|dasNov1|scaffold_11165 (46815-46959) | |
| 555-666, gnl|echTel1|scaffold_276380 (43049-43189) | |
| 555-666, gnl|fr1|chrUn (17791954-17791820) | |
| 555-666, gnl|galGal2|chr27 (866233-866375) | |
| 555-666, gnl|Hg17|chr17 (57991108-57991219) | |
| 555-666, gnl|hg17|chr7 (127849848-127849989) | |
| 555-666, gnl|loxAfr1|scaffold_20649 (281-138) | |
| 555-666, gnl|mm7|chr11 (105355798-105355935) | |
| 555-666, gnl|Mm7|chr11 (105355814-105355925) | |
| 555-666, gnl|monDom2|scaffold_18 (37705453-37705316) | |
| 555-666, gnl|oryCun1|scaffold_202809 (6903-6762) | |
| 555-666, gnl|panTro1|chr6 (130206229-130206370) | |
| 555-666, gnl|rheMac2|chr16 (58066686-58066827) | |
| 555-666, gnl|rn3|chr10 (94653175-94653312) | |
| 555-666, gnl|tetNig1|chr2 (11483326-11483460) | |
| 555-666, gnl|xenTro1|scaffold_1370 (97328-97195) | |
| 672-845, gnl|bosTau2|chr19 (39381961-39382129) | |
| 672-845, gnl|Hg17|chr17 (57996099-57996268) | |
| 672-845, gnl|Mm7|chr11 (105356505-105356674) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-117, gnl|bosTau2|chr2 (16102664-16102778) | |
| 1-117, gnl|Hg17|chr2 (171799836-171799722) | |
| 1-117, gnl|Mm7|chr2 (70625667-70625554) | |
| 555-666, gnl|bosTau2|chr19 (39380628-39380739) | |
| 555-666, gnl|canFam2|chr9 (13891120-13891263) | |
| 555-666, gnl|danRer3|chr3 (11695609-11695461) | |
| 555-666, gnl|dasNov1|scaffold_11165 (46815-46959) | |
| 555-666, gnl|echTel1|scaffold_276380 (43049-43189) | |
| 555-666, gnl|fr1|chrUn (17791954-17791820) | |
| 555-666, gnl|galGal2|chr27 (866233-866375) | |
| 555-666, gnl|Hg17|chr17 (57991108-57991219) | |
| 555-666, gnl|hg17|chr7 (127849848-127849989) | |
| 555-666, gnl|loxAfr1|scaffold_20649 (281-138) | |
| 555-666, gnl|mm7|chr11 (105355798-105355935) | |
| 555-666, gnl|Mm7|chr11 (105355814-105355925) | |
| 555-666, gnl|monDom2|scaffold_18 (37705453-37705316) | |
| 555-666, gnl|oryCun1|scaffold_202809 (6903-6762) | |
| 555-666, gnl|panTro1|chr6 (130206229-130206370) | |
| 555-666, gnl|rheMac2|chr16 (58066686-58066827) | |
| 555-666, gnl|rn3|chr10 (94653175-94653312) | |
| 555-666, gnl|tetNig1|chr2 (11483326-11483460) | |
| 555-666, gnl|xenTro1|scaffold_1370 (97328-97195) | |
| 672-845, gnl|bosTau2|chr19 (39381961-39382129) | |
| 672-845, gnl|Hg17|chr17 (57996099-57996268) | |
| 672-845, gnl|Mm7|chr11 (105356505-105356674) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fce (0.271592) | |
| cli (0.152812) | |
| nmm (0.132802) | |
| thg (0.126791) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| cli (0.152812) | |
| nmm (0.132802) | |
| thg (0.126791) |